PaintOmics 3: a web resource for the pathway analysis and visualization of multi-omics data

R Hernández-de-Diego, S Tarazona… - Nucleic acids …, 2018 - academic.oup.com
The increasing availability of multi-omic platforms poses new challenges to data analysis.
Joint visualization of multi-omics data is instrumental in better understanding …

PaintOmics 4: new tools for the integrative analysis of multi-omics datasets supported by multiple pathway databases

T Liu, P Salguero, M Petek… - Nucleic Acids …, 2022 - academic.oup.com
PaintOmics is a web server for the integrative analysis and visualisation of multi-omics
datasets using biological pathway maps. PaintOmics 4 has several notable updates that …

iPath3. 0: interactive pathways explorer v3

Y Darzi, I Letunic, P Bork, T Yamada - Nucleic acids research, 2018 - academic.oup.com
Abstract iPath3. 0 (http://pathways. embl. de) is a web-application for the visualization and
analysis of cellular pathways. It is freely available and open to everyone. Currently it is …

Escher: a web application for building, sharing, and embedding data-rich visualizations of biological pathways

ZA King, A Dräger, A Ebrahim… - PLoS computational …, 2015 - journals.plos.org
Escher is a web application for visualizing data on biological pathways. Three key features
make Escher a uniquely effective tool for pathway visualization. First, users can rapidly …

Pathview Web: user friendly pathway visualization and data integration

W Luo, G Pant, YK Bhavnasi… - Nucleic acids …, 2017 - academic.oup.com
Pathway analysis is widely used in omics studies. Pathway-based data integration and
visualization is a critical component of the analysis. To address this need, we recently …

WholePathwayScope: a comprehensive pathway-based analysis tool for high-throughput data

M Yi, JD Horton, JC Cohen, HH Hobbs… - BMC bioinformatics, 2006 - Springer
Abstract Background Analysis of High Throughput (HTP) Data such as microarray and
proteomics data has provided a powerful methodology to study patterns of gene regulation …

KEGG-based pathway visualization tool for complex omics data

K Arakawa, N Kono, Y Yamada, H Mori… - In silico …, 2005 - content.iospress.com
Pathway-level visualization of omics data provides an essential means for systems biology,
to capture the systematic properties of the inner activities of cells. Here we describe a web …

Pathway projector: web-based zoomable pathway browser using KEGG atlas and Google Maps API

N Kono, K Arakawa, R Ogawa, N Kido, K Oshita… - PloS one, 2009 - journals.plos.org
Background Biochemical pathways provide an essential context for understanding
comprehensive experimental data and the systematic workings of a cell. Therefore, the …

PathwayExplorer: web service for visualizing high-throughput expression data on biological pathways

B Mlecnik, M Scheideler, H Hackl, J Hartler… - Nucleic acids …, 2005 - academic.oup.com
While generation of high-throughput expression data is becoming routine, the fast, easy, and
systematic presentation and analysis of these data in a biological context is still an obstacle …

[HTML][HTML] KEGGscape: a Cytoscape app for pathway data integration

K Nishida, K Ono, S Kanaya, K Takahashi - F1000Research, 2014 - ncbi.nlm.nih.gov
In this paper, we present KEGGscape a pathway data integration and visualization app for
Cytoscape (http://apps. cytoscape. org/apps/keggscape). KEGG is a comprehensive public …