Matching metagenomic and/or metatranscriptomic data, currently often under-used, can be
useful reference for metaproteomic tandem mass spectra (MS/MS) data analysis. Here we …

Host–microbiome interactions have been shown to play important roles in human health and
diseases. Most of the current studies of the microbiome have been performed by genomic …

In nature microorganisms live in complex microbial communities. Comprehensive taxonomic
and functional knowledge about microbial communities supports medical and technical …

Background Proteolysis regulation allows gut microbes to respond rapidly to dynamic
intestinal environments by fast degradation of misfolded proteins and activation of regulatory …

Environmental meta-omics is rapidly expanding as sequencing capabilities improve,
computing technologies become more accessible, and associated costs are reduced. The in …

The gut microbiota is the largest and most complex microbial community in the human body.
Host-gut microbiota interactions have significant implications on health and disease. The …

The research presented in this PhD thesis is situated at the overlap of computer science and
biotechnology. In order to fully understand and grasp the concepts that are presented …

Meta-omic technologies such as metagenomics, metatranscriptomics and metaproteomics
can aid in the understanding of microbial community structure and metabolism. Although …

We are all colonized by a large microbiome, a complex set of microbes that have intimate
associations with us. Culture-based approaches have provided insights in the complexity of …