Function is what counts: how microbial community complexity affects species, proteome and pathway coverage in metaproteomics

P Lohmann, SS Schäpe, SB Haange… - Expert review of …, 2020 - Taylor & Francis
Introduction: Metaproteomics is an established method to obtain a comprehensive
taxonomic and functional view of microbial communities. After more than a decade, we are …

Metaproteomic data analysis at a glance: advances in computational microbial community proteomics

T Muth, BY Renard, L Martens - Expert review of proteomics, 2016 - Taylor & Francis
Introduction: Within the last decade, the study of microbial communities has gained
increasing research interest also driven by the recognition of the important role of these …

metaQuantome: an integrated, quantitative metaproteomics approach reveals connections between taxonomy and protein function in complex microbiomes

CW Easterly, R Sajulga, S Mehta, J Johnson… - Molecular & Cellular …, 2019 - ASBMB
Microbiome research offers promising insights into the impact of microorganisms on
biological systems. Metaproteomics, the study of microbial proteins at the community level …

A decade of metaproteomics: where we stand and what the future holds

P Wilmes, A Heintz‐Buschart, PL Bond - Proteomics, 2015 - Wiley Online Library
We are living through exciting times during which we are able to unravel the “microbial dark
matter” in and around us through the application of high‐resolution “meta‐omics” …

Perspective and guidelines for metaproteomics in microbiome studies

X Zhang, D Figeys - Journal of proteome research, 2019 - ACS Publications
The microbiome is emerging as a prominent factor affecting human health, and its dysbiosis
is associated with various diseases. Compositional profiling of microbiome is increasingly …

Database-independent de novo metaproteomics of complex microbial communities

HBC Kleikamp, M Pronk, C Tugui, LG da Silva… - Cell Systems, 2021 - cell.com
Metaproteomics has emerged as one of the most promising approaches for determining the
composition and metabolic functions of complete microbial communities. Conventional …

Metaproteomics to understand how microbiota function: The crystal ball predicts a promising future

J Armengaud - Environmental Microbiology, 2023 - Wiley Online Library
In the medical, environmental, and biotechnological fields, microbial communities have
attracted much attention due to their roles and numerous possible applications. The study of …

A straightforward and efficient analytical pipeline for metaproteome characterization

A Tanca, A Palomba, S Pisanu, M Deligios… - Microbiome, 2014 - Springer
Background The massive characterization of host-associated and environmental microbial
communities has represented a real breakthrough in the life sciences in the last years. In this …

Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows

T Van Den Bossche, BJ Kunath, K Schallert… - Nature …, 2021 - nature.com
Metaproteomics has matured into a powerful tool to assess functional interactions in
microbial communities. While many metaproteomic workflows are available, the impact of …

[HTML][HTML] Challenges and perspectives of metaproteomic data analysis

R Heyer, K Schallert, R Zoun, B Becher, G Saake… - Journal of …, 2017 - Elsevier
In nature microorganisms live in complex microbial communities. Comprehensive taxonomic
and functional knowledge about microbial communities supports medical and technical …