Novel computational method for predicting polytherapy switching strategies to overcome tumor heterogeneity and evolution

VD Jonsson, CM Blakely, L Lin, S Asthana, N Matni… - Scientific reports, 2017 - nature.com
… to predict static combination therapies that effectively address heterogeneity in a lymphoma
… of cancer heterogeneity and evolution. The application of optimal control theory to treatment

Molecular profiling of cancer patients enables personalized combination therapy: the I-PREDICT study

JK Sicklick, S Kato, R Okamura, M Schwaederle… - Nature medicine, 2019 - nature.com
… score was an independent predictor of an increased disease … addressed this question
with regard to TP53 alterations … are composed of a heterogeneous mix of genomic alterations…

Unraveling non-genetic heterogeneity in cancer with dynamical models and computational tools

M Pillai, E Hojel, MK Jolly, Y Goyal - Nature Computational Science, 2023 - nature.com
predictive cancer models and inform therapeutic strategies. … we highlight ongoing
computational efforts in addressing the … using a combination of metadata (for example, age, tumor

Comprehensive intra-individual genomic and transcriptional heterogeneity: Evidence-based Colorectal Cancer Precision Medicine

ID Kyrochristos, DH Roukos - Cancer treatment reviews, 2019 - Elsevier
… of modern oncology, including the static tumor homogeneity and single biopsy-guided …
sensitivity prediction and development of a drug bank to successfully address extensive genetic, …

Predictive computational modeling to define effective treatment strategies for bone metastatic prostate cancer

LM Cook, A Araujo, JM Pow-Sang, MM Budzevich… - Scientific reports, 2016 - nature.com
… Moreover, using patient specific information from bone metastatic specimens, we … the HCA
model in predicting the efficacy of TGFβ inhibitors on lesions that are heterogeneous for TGFβ …

Predictive approaches for drug combination discovery in cancer

SA Madani Tonekaboni, L Soltan Ghoraie… - Briefings in …, 2018 - academic.oup.com
… -art computational approaches for drug combination prediction, … Cocktail of drugs addresses
combination of more than two … Intra-tumor heterogeneity observed in many cancer types also …

Computational methods for characterizing cancer mutational heterogeneity

F Vandin - Frontiers in genetics, 2017 - frontiersin.org
… intra-tumor heterogeneity by using mutations from bulk … -related features are associated to
or predictive for some clinical … and treatment, but there still challenges to be addressed. First…

Independent drug action in combination therapy: implications for precision oncology

D Plana, AC Palmer, PK Sorger - Cancer discovery, 2022 - AACR
… to the ability of combinations to address tumor heterogeneity, but … Understanding response
heterogeneity could reveal predictive … Moreover, computational methods attempting to predict …

Computational immunogenomic approaches to predict response to cancer immunotherapies

V Addala, F Newell, JV Pearson, A Redwood… - Nature Reviews …, 2024 - nature.com
… for positivity and addressing whether optimum thresholds for … from these agents and to
tailor ICI combinations. Many … Computational neoantigen prediction pipelines have been …

In silico drug prescription for targeting cancer patient heterogeneity and prediction of clinical outcome

E Piñeiro-Yáñez, MJ Jiménez-Santos, G Gómez-López… - Cancers, 2019 - mdpi.com
tumour information layers like intra-tumour heterogeneity (ITH) … computational efforts to
consider ITH on choosing therapies … Next, we wanted to address if this result is biased by EGFR …