Cell signaling heterogeneity is modulated by both cell-intrinsic and-extrinsic mechanisms: An integrated approach to understanding targeted therapy

E Kim, JY Kim, MA Smith, EB Haura… - PLoS biology, 2018 - journals.plos.org
… that addresses the impact of signaling heterogeneity on targeted … Tumor heterogeneity is
known to contribute to drug … However, in addition to predicting average cell viability, we also …

Predicting heterogeneity in clone-specific therapeutic vulnerabilities using single-cell transcriptomic signatures

C Suphavilai, S Chia, A Sharma, L Tu, RP Da Silva… - Genome Medicine, 2021 - Springer
… for taking intra-tumor heterogeneity into account. Based on … Extending to combinations of
drugs, we show that drug pairs … To address these questions, we develop a machine learning …

CellBox: interpretable machine learning for perturbation biology with application to the design of cancer combination therapy

B Yuan, C Shen, A Luna, A Korkut, DS Marks… - Cell systems, 2021 - cell.com
… provides informative data resources for constructing computational models of cell biology.
Models … To address these challenges, we introduce a hybrid approach that combines explicit …

Tumour heterogeneity and resistance to cancer therapies

I Dagogo-Jack, AT Shaw - Nature reviews Clinical oncology, 2018 - nature.com
… are thought to predate treatment and are predictive of a poor … of treatment strategies that
address tumour heterogeneity. The … patients into models, both preclinical and computational, that …

Addressing current challenges in cancer immunotherapy with mathematical and computational modelling

A Konstorum, AT Vella, AJ Adler… - Journal of the …, 2017 - royalsocietypublishing.org
… mono- and combination therapies and basic scientists in … the association between tumour
heterogeneity and survival in … prediction and optimal time and selection of treatment, and …

Bulk and single-cell next-generation sequencing: individualizing treatment for colorectal cancer

ID Kyrochristos, DE Ziogas, A Goussia, GK Glantzounis… - Cancers, 2019 - mdpi.com
… novel strategies for therapeutic response prediction and drug … tumor heterogeneity and how
it affects therapeutic response, … , addressing extensive genetic, genomic and transcriptional …

An analysis of genetic heterogeneity in untreated cancers

JG Reiter, M Baretti, JM Gerold… - … Reviews Cancer, 2019 - nature.com
… the different forms of genetic tumour heterogeneity and re-… degree of heterogeneity, the
key questions addressed in this … lung cancers complicates the driver functionality prediction. …

Using single-cell multiple omics approaches to resolve tumor heterogeneity

MA Ortega, O Poirion, X Zhu, S Huang… - Clinical and translational …, 2017 - Springer
… of computational models have been developed to address … the input fastq files it is now
possible to highlight predictive … techniques when combined with computational analysis tools will …

Addressing cellular heterogeneity in tumor and circulation for refined prognostication

SB Lim, T Yeo, WD Lee, AAS Bhagat… - Proceedings of the …, 2019 - National Acad Sciences
… Here we report an unanticipated impact of intratumor heterogeneity (ITH) on risk prediction
of recurrence in NSCLC, underscoring the need for a better genomic strategy to refine …

Patient-customized drug combination prediction and testing for T-cell prolymphocytic leukemia patients

L He, J Tang, EI Andersson, S Timonen… - Cancer research, 2018 - AACR
… a computational–experimental drug combination prediction and … Combination therapies are
essential to address the genetic … Modeling of cancer heterogeneity is considered extremely …