GPS-Palm: a deep learning-based graphic presentation system for the prediction of S-palmitoylation sites in proteins

W Ning, P Jiang, Y Guo, C Wang, X Tan… - Briefings in …, 2021 - academic.oup.com
… Thus, we used CD-HIT [38], a program for clustering similar … named CSS-Palm 1.0 for the
prediction of S-palmitoylation sites … released CSS-Palm 2.0 [22], which was further updated into …

Machine learning methods in prediction of protein palmitoylation sites: a brief review

Y Li, F Pu, J Wang, Z Zhou, C Zhang… - Current …, 2021 - ingentaconnect.com
… on the application of machine learning methods to predict palmitoylation sites has become
a hot … CSS-Palm: palmitoylation site prediction with a clustering and scoring strategy (CSS). …

SPalmitoylC-PseAAC: A sequence-based model developed via Chou's 5-steps rule and general PseAAC for identifying S-palmitoylation sites in proteins

W Hussain, YD Khan, N Rasool, SA Khan… - Analytical biochemistry, 2019 - Elsevier
… proposed predictor can help in predicting the palmitoylation sites … version of CSS-Palm ie
CSS-Palm 2.0 with improved … the development of a new model for prediction is, the objectively …

[HTML][HTML] RFCM-PALM: In-Silico Prediction of S-Palmitoylation Sites in the Synaptic Proteins for Male/Female Mouse Data

SS Bandyopadhyay, AK Halder… - International Journal of …, 2021 - mdpi.com
… In recent years, results of large-scale proteome databases … to develop tools to predict sites
of specific S-palmitoylation in other … in MusiteDeep and 0.1324 in CSS-Palm). A high precision …

SwissPalm 2: Protein S-Palmitoylation Database

M Blanc, FPA David, FG van der Goot - Protein Lipidation: Methods and …, 2019 - Springer
… Various prediction software have been developed based on … of cellular palmitoylation and
opening new areas of research. … orthologous sequences, palmitoylation site predictions, and a …

[HTML][HTML] MDD-Palm: Identification of protein S-palmitoylation sites with substrate motifs based on maximal dependence decomposition

SL Weng, HJ Kao, CH Huang, TY Lee - PloS one, 2017 - journals.plos.org
… protein S-palmitoylation sites have been created in recent … [16,17], is the first S-palmitoylation
site predictor to use a … The prediction performance of CSS-Palm is encouraging, with highly …

Physicochemical sequence characteristics that influence S-palmitoylation propensity

KD Reddy, J Malipeddi, S DeForte… - Journal of …, 2017 - Taylor & Francis
… We developed a new palmitoylation predictor that … ), CSS-Palm 4.0 (green, bottom right),
and the predictor described … In general, our predictor appears to predict palmitoylated sites with …

A machine-learning approach for predicting palmitoylation sites from integrated sequence-based features

L Li, Q Luo, W Xiao, J Li, S Zhou, Y Li… - … of Bioinformatics and …, 2017 - World Scientific
… Therst predictor for palmitoylation sites, CSS-Palm, was created by Zhou et al.based on a …
It allows the model updates in parallel with new data which continuously increases in …

NPalmitoylDeep-PseAAC: A predictor of N-palmitoylation sites in proteins using deep representations of proteins and PseAAC via modified 5-steps rule

S Naseer, W Hussain, YD Khan… - Current …, 2021 - ingentaconnect.com
CSS-Palm: palmitoylation site prediction with a clustering and scoring strategy (CSS).
Bioinformatics 2006; 22(7): 894-6. http://dx.doi.org/10.1093/bioinformatics/btl013 PMID: 16434441 […

[HTML][HTML] GPS-Lipid: a robust tool for the prediction of multiple lipid modification sites

Y Xie, Y Zheng, H Li, X Luo, Z He, S Cao, Y Shi… - Scientific reports, 2016 - nature.com
CSS-Palm 27 and CKSAAP-Palm 28 are two widely-used … , we developed an update
version of GPS algorithm, which … of myristoylation sites with at least one palmitoylation sites in …