CEGA—a catalog of conserved elements from genomic alignments

A Dousse, T Junier, EM Zdobnov - Nucleic acids research, 2016 - academic.oup.com
… Since conserved elements are initially identified from a … each individual element to search
whole genome assemblies of … set of vertebrate elements to search all vertebrate genomes. A …

Conserved Noncoding Elements Evolve Around the Same Genes Throughout Metazoan Evolution

P Gonzalez, QC Hauck… - … Biology and Evolution, 2024 - academic.oup.com
… dozens of genomes from three invertebrate phyla, providing genome-wide maps of potential
cis-regulatory elements. In … Evolutionarily conserved sequences on human chromosome 21. …

GC content heterogeneity transition of conserved noncoding sequences occurred at the emergence of vertebrates

N Hettiarachchi, N Saitou - Genome Biology and Evolution, 2016 - academic.oup.com
… In order to determine where in the line of evolution this GC content heterogeneity for CNSs
… on fungal genomes as well as genomes of invertebrates and non-mammalian vertebrates to …

[HTML][HTML] A method for identification of highly conserved elements and evolutionary analysis of superphylum Alveolata

LI Rubanov, AV Seliverstov, OA Zverkov… - BMC …, 2016 - Springer
insect genomes with the genome of Drosophila melanogaster as well as the genomes of
vertebrates with the human genome… and vertebrates, and the number of UCEs in insects proved …

Conserved non-coding elements: developmental gene regulation meets genome organization

D Polychronopoulos, JWD King, AJ Nash… - Nucleic acids …, 2017 - academic.oup.com
… from the UCSC genome browser and spans ∼600 million years of evolution since the last …
have defined sets of evolutionarily conserved CNEs, each using different conservation criteria, …

Monophyletic origin and divergent evolution of animal telomerase RNA

D Logeswaran, Y Li, JD Podlevsky… - … biology and evolution, 2021 - academic.oup.com
… This dramatic size expansion in vertebrate and fungal TRs … TR genes in many metazoan
species has been challenging and unsuccessful, which limits our understanding of TR evolution

Transposons, genome size, and evolutionary insights in animals

A Canapa, M Barucca, MA Biscotti, M Forconi… - … and genome research, 2016 - karger.com
… organization and evolution of the genome. One of the peculiarities of these changes in genome
size is … Indeed, repeated elements are generally highly methylated in plants, yeast, and …

Diversity, evolution and medical applications of insect antimicrobial peptides

E Mylonakis, L Podsiadlowski… - … of the Royal …, 2016 - royalsocietypublishing.org
… families and to identify evolutionarily conserved and taxon-specific … Study of evolution of
novel genes participating in insect … to each other than to fungal or plant thaumatins seems to rule …

[HTML][HTML] Evolutionary conservation of the components in the TOR signaling pathways

H Tatebe, K Shiozaki - Biomolecules, 2017 - mdpi.com
… In this review, we summarize the evolutionarily conserved functions of the key regulatory …
revealed evolutionary conservation of TOR from yeast to humans [3]. Expanding genome data …

[PDF][PDF] Eukaryotic pangenomes

GF Richard - … : Diversity, Dynamics and Evolution of Genomes, 2020 - library.oapen.org
… Phylogenetic studies of 21 fungal genomes showed that these megasatellites were uniquely
found in C. glabrata , but their presence among other members of the Nakaseomyces has …