Characterization of human cytomegalovirus genome diversity in immunocompromised hosts by whole-genome sequencing directly from clinical specimens

E Hage, GS Wilkie, S Linnenweber-Held… - The Journal of …, 2017 - academic.oup.com
Human cytomegalovirus (HCMV) contributes significantly to morbidity and mortality in
immunocompromised patients, especially after transplantation, as well as in congenitally infected …

Human cytomegalovirus genome diversity in longitudinally collected breast milk samples

J Götting, K Lazar, NM Suárez, L Steinbrück… - Frontiers in cellular …, 2021 - frontiersin.org
HCMV-specific target enrichment and high-throughput … with human cytomegalovirus (HCMV;
species Human … family Herpesviridae, are highly prevalent in people worldwide and result …

Human cytomegalovirus multiple-strain infections and viral population diversity in haematopoietic stem cell transplant recipients analysed by high-throughput …

A Dhingra, J Götting, PR Varanasi… - Medical Microbiology …, 2021 - Springer
… ) and thus to analyse the extent of HCMV genome diversity and its potential impact on clinical
… Similarly, extensive HCMV strain variability among different individuals with high intrahost …

Impacts of genome-wide analyses on our understanding of human herpesvirus diversity and evolution

DW Renner, ML Szpara - Journal of virology, 2018 - Am Soc Microbiol
… we review recent studies that have used high-throughputgenetic diversity found among the
members of each species of … a new genotype to become prevalent, akin to a genetic shift. (B) …

Human cytomegalovirus haplotype reconstruction reveals high diversity due to superinfection and evidence of within-host recombination

J Cudini, S Roy, CJ Houldcroft… - Proceedings of the …, 2019 - National Acad Sciences
… These results highlight that high HCMV diversity present in some samples is caused by …
the host diversity for single-strain HCMV infections is no greater than for other herpesviruses. …

Human cytomegalovirus genomics and transcriptomics through the lens of next-generation sequencing: revision and future challenges

J Martí-Carreras, P Maes - Virus Genes, 2019 - Springer
… In this review, an overview of HCMV next-generation … in genomic diversity, strain genotyping,
full-length genome methodologies… High-throughput NGS allowed to increase the number of …

Human cytomegalovirus genomes sequenced directly from clinical material: variation, multiple-strain infection, recombination, and gene loss

NM Suárez, GS Wilkie, E Hage… - The Journal of …, 2019 - academic.oup.com
Human cytomegalovirus (HCMV) poses a risk, particularly to … with human immunodeficiency
virus/AIDS. Prior to the advent of high-throughput technologies, studies of HCMV genomes

Genomic and geographical structure of human cytomegalovirus

OJ Charles, C Venturini, S Gantt… - Proceedings of the …, 2023 - National Acad Sciences
… We highlight examples of where our approach can help to provide insights for further …
To characterize CMV genomic diversity, we first aligned the genomes and then calculated …

Multiple-strain infections of human cytomegalovirus with high genomic diversity are common in breast milk from human immunodeficiency virus–infected women in …

NM Suárez, KG Musonda, E Escriva… - The Journal of …, 2019 - academic.oup.com
… Strain diversity was extensive among individuals but … High-throughput sequencing studies
at the whole-genome level have started to facilitate a broader view of HCMV diversity, but …

GRACy: A tool for analysing human cytomegalovirus sequence data

S Camiolo, NM Suarez, A Chalka, C Venturini… - Virus …, 2021 - academic.oup.com
HCMV genomics has been significantly advanced in recent years by high-throughput
variation among HCMV strains, had previously required extensive manual intervention. The variant …