… We discuss briefly the types of molecular data that are used in molecular network analyses,
… inferring molecular networks, and review efforts to validate and visualize molecular networks. …

… The networks spanned 32 biological contexts and were scored in terms of causal validity
with … a practical way to empirically assess inferred molecular networks in a causal sense. …

… further explore the rewiring events in their network context. Unfortunately, there is currently
no … -specific networks on the one hand, and produce intercomparable differential networks on …

… of molecular substructures. And the obtained molecular context representation can capture
… used as a reliable and effective tool for molecular expression. Availability: The source code …

… First of all, each pathway “lives” in a molecular context which is defined by a set of
molecules (in our case, Glc&HK&GPI&PFK&ATP&ATP) and which identifies the function of any …

… Instead the severity of perturbation to the complex network of molecular interactions in the
cell may … Studying variants in the context of protein–protein interaction (PPI) networks and …

… Correcting for size, we find that the DIP network provides the … network with both high
efficiency and performance. This work provides a benchmark for selection of molecular networks in …

… Additionally, the representation of data from metabolomics within the context of metabolic
networks is intuitive and allows for the use of statistical analysis that can better summarize …

… the molecular constituents of cells and tissues. We present DeePiCt (deep picker in context),
… cellular ribosomes, with emphasis on their contextual association with mitochondria and the …

Regulatory elements determine the connectivity of molecular networks and mediate a … different
types of regulatory elements found in molecular networks with a focus on DNA regulatory …