SumSec: accurate prediction of sumoylation sites using predicted secondary structure

A Dehzangi, Y López, G Taherzadeh, A Sharma… - Molecules, 2018 - mdpi.com
… a higher specificity and accuracy than the SUMOsp (v1.0) [32]. Next, … methods for sumoylation
site prediction problem and … dataset using the pSumo-CD web server. We report sensitivity, …

Recent Development of Machine Learning Methods in Sumoylation Sites Prediction

YW Zhao, S Zhang, H Ding - Current Medicinal Chemistry, 2022 - ingentaconnect.com
SUMOsp in terms of threshold-related performance, Xue et al. [13] developed a SUMO site
prediction system called SUMOsp … tion, they demonstrated that SUMOsp is a robust prediction …

C-iSUMO: a sumoylation site predictor that incorporates intrinsic characteristics of amino acid sequences

Y Lopez, A Dehzangi, HM Reddy, A Sharma - Computational Biology and …, 2020 - Elsevier
… capable of accurately predicting sumoylation sites has turned out … For instance, a predictor
called SUMOsp made use of a … to the trained web server for sumoylation site identification. To …

HseSUMO: Sumoylation site prediction using half-sphere exposures of amino acids residues

A Sharma, A Lysenko, Y López, A Dehzangi, R Sharma… - BMC genomics, 2019 - Springer
… to prediction of sumoylation sites have been proposed. Some earlier approaches are SUMOsp
[21], which employs a group-based prediction … the pSumo-CD web server. The resulting …

SUMOgo: Prediction of sumoylation sites on lysines by motif screening models and the effects of various post-translational modifications

CC Chang, CH Tung, CW Chen, CH Tu, YW Chu - Scientific reports, 2018 - nature.com
SUMOylation sites with the parallel cascade identification (PCI) algorithm 15 . The web
servers SUMOsp 11 and GPS-SUMO 1 were developed using group-based prediction system (…

GPS-SUMO 2.0: an updated online service for the prediction of SUMOylation sites and SUMO-interacting motifs

Y Gou, D Liu, M Chen, Y Wei, X Huang… - Nucleic Acids …, 2024 - academic.oup.com
SUMOylation sites and SIMs. From 2006 to 2009, we developed the group-based prediction
system (GPS) algorithm SUMOsp (… Usage of the GPS-SUMO 2.0 web server In GPS-SUMO

[PDF][PDF] Computational prediction of proteins sumoylation: a review on the methods and databases

S Ramazi, J Zahiri, S Arab, Y Parandian - J. Nanomed. Res, 2016 - researchgate.net
… Many SUMOylation sites contain a consensus sequence … 23% of SUMOylation sites do
not follow SUMOylation of this … other SUMOylation motifs are reported such as SUMOylation

Sumonet: Deep sequential prediction of sumoylation sites

B Dilekoglu, O Tastan - bioRxiv, 2023 - biorxiv.org
SUMO [52], which is the latest version of a series of tools developed earlier (SUMOsp [49],
and SUMOsp … The web server provides predicted labels and the associated scores based on …

Computational prediction of SUMOylation sites in proteins

Y Ramtirtha - 2022 - dr.iiserpune.ac.in
… 4.2 Server description The web server has two separate search forms for the two different
kinds of homology data. The database can be searched using UniProt, UniRef90, gene symbol…

iSUMOK-PseAAC: prediction of lysine sumoylation sites using statistical moments and Chou's PseAAC

YD Khan, NS Khan, S Naseer, AH Butt - PeerJ, 2021 - peerj.com
… technique is proposed to predict the Sumoylation sites in proteins by … SUMOsp was based
on manually curated datasets using the integration of two methods, GPS and MotifX. SUMOsp