Application of an automated natural language processing (NLP) workflow to enable federated search of external biomedical content in drug discovery and …

R McEntire, D Szalkowski, J Butler, MS Kuo… - Drug discovery today, 2016 - Elsevier
… an NLP search and semantic integration, … Semantics) [47]. Anzo tools were used to build
the underlying ontology that structured the data from many sources into an integrated framework

[HTML][HTML] Linked open data-based framework for automatic biomedical ontology generation

M Alobaidi, KM Malik, S Sabra - BMC bioinformatics, 2018 - Springer
… the current automated and semi-automated approaches, our proposed framework integrates
natural language processing and semantic enrichment to accurately detect concepts; uses …

[HTML][HTML] A comparison of word embeddings for the biomedical natural language processing

Y Wang, S Liu, N Afzal, M Rastegar-Mojarad… - Journal of biomedical …, 2018 - Elsevier
… used in biomedical Natural Language Processing (NLP) … semantic properties and linguistic
relationships between words. Different textual resources (eg, Wikipedia and biomedical

Querying biomedical linked data with natural language questions

T Hamon, N Grabar, F Mougin - Semantic Web, 2017 - content.iospress.com
natural language questions into SPARQL queries. We use Natural Language Processing
tools, semantic resources … to a specifically designed Grammatical Framework grammar [21]. It …

Machine learning techniques for biomedical natural language processing: a comprehensive review

EH Houssein, RE Mohamed, AA Ali - IEEE Access, 2021 - ieeexplore.ieee.org
… and detecting semanticbiomedical NLP systems and their tasks are illustrated below,
which are how NLP tools incorporated into a pipeline designed on top of a particular framework

[HTML][HTML] A survey on literature based discovery approaches in biomedical domain

V Gopalakrishnan, K Jha, W Jin, A Zhang - Journal of biomedical …, 2019 - Elsevier
… techniques from Natural Language Processing (NLP), … emphasis on methodologies and
frameworks) that have evolved … to choose relevant semantic types during the discovery process. …

DataMed–an open source discovery index for finding biomedical datasets

X Chen, AE Gururaj, B Ozyurt, R Liu… - Journal of the …, 2018 - academic.oup.com
… by implementing advanced natural language processing and … knowledge resources such as
ontologies and semantic web … as the Omics Discovery Index, 8 developed by the biomedical

Automated ontology generation framework powered by linked biomedical ontologies for disease-drug domain

M Alobaidi, KM Malik, M Hussain - Computer methods and programs in …, 2018 - Elsevier
… automated ontology generation framework that is empowered by Linked Biomedical
Ontologies. This framework integrates various natural language processing, semantic enrichment, …

How can natural language processing help model informed drug development?: a review

R Bhatnagar, S Sardar, M Beheshti, JT Podichetty - JAMIA open, 2022 - academic.oup.com
… Relation extraction It is the task of extracting structured information and semantic
relations from natural language text between 2 or more entities of a certain type like person, …

[HTML][HTML] NOBLE–Flexible concept recognition for large-scale biomedical natural language processing

E Tseytlin, K Mitchell, E Legowski, J Corrigan… - BMC …, 2016 - Springer
… metadata such as hierarchy information, definitions, semantic types, and source vocabularies.
NOBLE Coder uses JDBM 3.0 library as a NoSQL solution to persist these tables to disk. …