The chromatin accessibility landscape of primary human cancers

…, C Curtis, Cancer Genome Atlas Analysis Network†… - Science, 2018 - science.org
… Although the 2% of the human genome that encodes proteins has been extensively studied,
much remains to be learned about the noncoding genome and gene regulation in cancer. …

[PDF][PDF] A single-cell atlas of chromatin accessibility in the human genome

K Zhang, JD Hocker, M Miller, X Hou, J Chiou… - Cell, 2021 - cell.com
human cell types To identify accessible chromatin regions in each of the 111 cell types, we
aggregated chromatin accessibility … We then merged these accessible chromatin regions to …

Chromatin accessibility and the regulatory epigenome

SL Klemm, Z Shipony, WJ Greenleaf - Nature Reviews Genetics, 2019 - nature.com
… Most single-nucleotide polymorphisms (SNPs) in the human genome occur in non-coding
and intergenic genomic regions and individually contribute small or indirect effects to complex …

[PDF][PDF] Local determinants of the mutational landscape of the human genome

A Gonzalez-Perez, R Sabarinathan, N Lopez-Bigas - Cell, 2019 - cell.com
… The chromatin landscape at the local level—the focus of this Review (Box 2)—is dominated
by the alternation of nucleosomes and linkers, interspersed with nucleosome-free regions …

Landscape of cohesin-mediated chromatin loops in the human genome

F Grubert, R Srivas, DV Spacek, M Kasowski… - Nature, 2020 - nature.com
… The development of high-throughput chromatin conformation assays (for example, Hi-C 1 …
3D organization of the human genome and how it influences gene regulation. Topologically …

[PDF][PDF] Chromatin accessibility landscape in human early embryos and its association with evolution

L Gao, K Wu, Z Liu, X Yao, S Yuan, W Tao, L Yi, G Yu… - Cell, 2018 - cell.com
… of the chromatin regulatory landscape during human early … report that the chromatin
accessibility landscape is gradually established … In the human genome, only a small percentage of …

Chromatin accessibility profiling methods

L Minnoye, GK Marinov, T Krausgruber, L Pan… - Nature Reviews …, 2021 - nature.com
… profiling methods may serve as an analytic foundation to identify regulatory regions, it is
reported that often less than 50% of accessible regions in human DNA are active as enhancers …

A human cell atlas of fetal chromatin accessibility

S Domcke, AJ Hill, RM Daza, J Cao, DR O'Day… - Science, 2020 - science.org
… regions that we identified spans 17% of the human genome, which is in line with recent
bulk DNase-seq profiles from fetal tissues (91). Most of these ~1 million elements are cell type–…

The landscape of accessible chromatin in mammalian preimplantation embryos

J Wu, BO Huang, HE Chen, Q Yin, Y Liu, Y Xiang… - Nature, 2016 - nature.com
chromatin landscape and its dynamics in this period remain unexplored. Here we report a
genome-wide map of accessible chromatin in … for transposase-accessible chromatin with high …

Genomic landscape of CpG rich elements in human

VN Babenko, IV Chadaeva, YL Orlov - BMC evolutionary biology, 2017 - Springer
… We used human genome version hg19; mouse genome version mm10; dog … 100–200 bp)
DNA fragments. They indicate open or accessible chromatin where DNA is not tightly wrapped …