[HTML][HTML] The dynamic landscape of open chromatin during human cortical neurogenesis

L de la Torre-Ubieta, JL Stein, H Won, CK Opland… - Cell, 2018 - cell.com
… Non-coding regions comprise most of the human genome and harbor a significant fraction …
in human cortical neurogenesis by contrasting chromatin accessibility and gene expression in …

Landscape of stimulation-responsive chromatin across diverse human immune cells

D Calderon, MLT Nguyen, A Mezger, A Kathiria… - … genetics, 2019 - nature.com
… To study the impact of genetic variation on the chromatin landscape, we used allele-specific
measurement of open chromatin to identify genotype-dependent sites (ASCs). While the …

KAS-ATAC reveals the genome-wide single-stranded accessible chromatin landscape of the human genome

SH Kim, GK Marinov, W Greenleaf - bioRxiv, 2024 - biorxiv.org
… Figure 2 (preceding page): The single-stranded accessible chromatin landscape is distinct
from total open chromatin genomic maps. (a) DESeq2 analysis of GM12878 ATAC and KAS-…

Characterizing chromatin landscape from aggregate and single-cell genomic assays using flexible duration modeling

MI Gabitto, A Rasmussen, O Wapinski… - Nature …, 2020 - nature.com
… mapping of the accessible chromatin landscape of individual … the methylome landscape and
different chromatin features have … in the mouse or human genome as regions spanning 1 kb …

ATAC-STARR-seq reveals transcription factor–bound activators and silencers within chromatin-accessible regions of the human genome

TJ Hansen, E Hodges - Genome research, 2022 - genome.cshlp.org
gene regulatory elements to drive transcription on a genome-… Most gene regulatory activity
occurs within accessible chromatin, … retain chromatin accessible peaks in the human genome

[HTML][HTML] A compendium of chromatin contact maps reveals spatially active regions in the human genome

AD Schmitt, M Hu, I Jung, Z Xu, Y Qiu, CL Tan, Y Li… - Cell reports, 2016 - cell.com
… of chromatin organization in human tissues. Through integrative analysis of chromatin contact
maps in 21 primary human … We also discover genomic regions that exhibit unusually high …

Genetic determinants of co-accessible chromatin regions in activated T cells across humans

RE Gate, CS Cheng, AP Aiden, A Siba, M Tabaka… - … genetics, 2018 - nature.com
… We found that regions of accessible chromatin (ATAC-peaks) are co-accessible at kilobase
chromatin organization measured by in situ Hi-C in T cells. Fifteen percent of genetic variants …

Chromatin accessibility landscape of articular knee cartilage reveals aberrant enhancer regulation in osteoarthritis

Y Liu, JC Chang, CC Hon, N Fukui, N Tanaka… - Scientific Reports, 2018 - nature.com
… Therefore, our study provides an accessible chromatin landscape of cartilage tissue for
better interpretation of other genetic and epigenomic data relevant to OA and other …

An integrated chromatin accessibility and transcriptome landscape of human pre-implantation embryos

L Liu, L Leng, C Liu, C Lu, Y Yuan, L Wu… - Nature …, 2019 - nature.com
… that account for over 40% of the human genome 30 , and include long terminal repeats …
genes 31 , a systematic survey of the CA landscape of all of the retrotransposons during human

A compendium of promoter-centered long-range chromatin interactions in the human genome

I Jung, A Schmitt, Y Diao, AJ Lee, T Liu, D Yang… - … genetics, 2019 - nature.com
… To systematically annotate candidate target genes for the cREs in the human genome,
we performed capture Hi-C experiments (Fig. 1a and Supplementary Fig. 1) to interrogate …