… for creating OGs across taxonomic levels, making nested groups hierarchically … eggNOG
to infer pairwise orthology mappings. Finally, users can provide a list of target organisms, or …

… that reported in studies on model organisms, outlining the core … of orthologous groups defined
in the eggNOG database, … Bayesian inference to compute the probability that an eggNOG/…

… version 4.0 of the eggNOG database [23], which provides non-supervised orthologous groups
for 2031 species across … of nested taxonomic levels, in this example from Saccharomyceta …

… we first introduced eggNOG database and KEGG ORTHOLOGY (KO) database for orthologous
(… is typically a hypothetical protein, the organisms from which such protein is derived from …

… of animals, plants, and microorganisms such as … ) (Table 4 and Table S1, Figure 1B). In
addition, 41,771 full-length transcripts were annotated to 25 functional categories in the eggNOG …

… orthologous groups: 1481 (OrthoMCL) versus 1231 (OMA). Taking as reference only the
orthologous groups shared by the 3 organisms of … invadens was the organism with the highest …

… eggNOG MPRs were substantially smaller than KEGG MPRs in 3 out of 6 environments (human,
other animals … on the organism having or lacking a specific gene (KEGG ortholog). For …

… There are number of methods used to infer orthology and paralogy. … to previous release of
EggNOG, V4 contains tripled the underlying species set to cover 3686 organisms. It also gives …

… of biological knowledge between organisms. Given the … through heuristic analyses of
pairwise sequence similarity scores (or expectation values) obtained from an all-vs-all BLAST [4] …

… the male animals had high abundances of Bacteroides, whereas female animals were enriched
… separately via BLAST against the KEGG, EggNOG, CAZy, and CARD databases using …