Application of nanopore sequencing in the detection of foodborne microorganisms

Y Zhou, M Ren, P Zhang, D Jiang, X Yao, Y Luo… - Nanomaterials, 2022 - mdpi.com
… serotyping of foodborne pathogens. … foodborne diseases, the principle of nanopore sequencing
technology, the application of nanopore sequencing technology in foodborne pathogens

Rapid, multiplexed, whole genome and plasmid sequencing of foodborne pathogens using long-read nanopore technology

TL Taylor, JD Volkening, E DeJesus, M Simmons… - Scientific reports, 2019 - nature.com
… the use of long-read nanopore sequencing to simultaneously sequence the entire … nanopore
sequencing assemblies for rapid preliminary phylogenetic inference. Nanopore sequencing

Towards real-time and affordable strain-level metagenomics-based foodborne outbreak investigations using Oxford nanopore sequencing technologies

FE Buytaers, A Saltykova, S Denayer… - Frontiers in …, 2021 - frontiersin.org
Foodborne diseases represent a major burden worldwide (WHO, 2015). Foodborne
pathogens can cause large outbreaks affecting multiple people sometimes in different regions. In …

Nanopore sequencing and bioinformatics for rapidly identifying cultural heritage spoilage microorganisms

A Grottoli, M Beccaccioli, E Zoppis, RS Fratini… - Frontiers in …, 2020 - frontiersin.org
… investigate the presence of microorganisms on CH surfaces: isolation of microorganisms
for the nanopore sequencing analysis and isolation of cultivable bacteria for Fourier-transform …

Comprehensive identification of pathogenic microbes and antimicrobial resistance genes in food products using nanopore sequencing-based metagenomics

AWT Lee, ICF Ng, EYK Wong, ITF Wong, RPP Sze… - Food …, 2024 - Elsevier
… Although our study did not compare the effects of DNA extraction kits on food microbiomes,
our results indicated its feasibility and effectiveness in detecting foodborne pathogens and …

Strain-level characterization of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore …

FE Buytaers, B Verhaegen… - Frontiers in …, 2024 - frontiersin.org
… with the different sequencing and extraction methods… sequencing. While the use of a host
removal DNA extraction kit and targeted sequencing using a database of foodborne pathogens

High throughput sequencing for detection of foodborne pathogens

C Sekse, A Holst-Jensen, U Dobrindt… - Frontiers in …, 2017 - frontiersin.org
… to analyze and interpret the sequence data. The influence of … and management of foodborne
pathogens. Despite significant … with the Oxford Nanopore MinION sequencer promise to …

Suitability of the MinION long read sequencer for semi-targeted detection of foodborne pathogens

S Azinheiro, F Roumani, J Carvalho, M Prado… - Analytica Chimica …, 2021 - Elsevier
… Contrary to the aforementioned, Oxford Nanopore launched the MinION long-read sequencer.
This portable device has a reduced cost, and can be combined with simple and rapid …

Nanopore-based surveillance of zoonotic bacterial pathogens in farm-dwelling peridomestic rodents

NA Jahan, LL Lindsey, EJ Kipp, A Reinschmidt… - pathogens, 2021 - mdpi.com
… We leveraged the Oxford Nanopore MinION sequencer to provide a rapid real-time survey
of putative zoonotic foodborne pathogens, among others. Rodents were live trapped (n = 90) …

Evaluation of Identification and Molecular Characterization of Foodborne Pathogens by Whole Genome Sequencing Through Illumina and Nanopore

NJL Guerra - 2021 - search.proquest.com
… typing method for pathogens of interest … Nanopore sequencing for rapid identification and
molecular characterization of E. coli and Salmonella, two major foodborne bacterial pathogens. …