M Maguire, JA Kase, D Roberson, T Muruvanda… - PloS one, 2021 - journals.plos.org
… foodborne illnesses and outbreak investigations [24]. WGS is being used to monitor and identify foodbornepathogens [… and detection limit of nanoporesequencing on STEC enrichment …
… Since the dominance of either of these bacteria was obvious in the pre-market stage of collection, we hypothesize the natural fermentation process as the protective state of this product, …
F Forghani, S Li, S Zhang, DA Mann… - Applied and …, 2020 - Am Soc Microbiol
… can detect and subtype foodbornepathogens in a single … (MDA), and nanopore sequencing real-time analysis for … 1 h of sequencing in a nanoporesequencer. Flour samples …
S Bharadwaj, VD Dwivedi, N Kirtipal - Microbial Genomics in Sustainable …, 2019 - Springer
… Foodbornepathogens mainly comprise the bacteria and fungi that have been frequently reported for the foodborne illnesses through consumption of spoiled food as well as epidemic …
EA Oniciuc, E Likotrafiti, A Alvarez-Molina, M Prieto… - Genes, 2018 - mdpi.com
… resistant strains from various foodbornepathogens, such as … whole genome sequencing (WGS) of bacterial pathogens for … or non-cultivable microorganisms, and therefore could assist …
… a foodborne outbreak investigation, 2) important clues about the long-term evolution of enteric pathogens, 3) … identification of viral pathogens in clinical samples by real-time nanopore …
Y Cao, S Fanning, S Proos, K Jordan… - Frontiers in …, 2017 - frontiersin.org
… the transmission of foodbornepathogens across international … as a single strand through the nanopore. Base calling is then … 16S rDNA sequencing is the ability to characterize bacteria …
B Bogaerts, A Van den Bossche… - Journal of Clinical …, 2024 - Am Soc Microbiol
… monocytogenes, 14 ST6 isolates were selected, six of which were associated with a suspected foodborne outbreak that occurred in 2020. Routine surveillance using Illumina …
SH Lee, S Lee, SH Park, OK Koo - Frontiers in Microbiology, 2023 - frontiersin.org
… Nanoporesequencing, a MinION sequencing library was prepared using the Nanopore Ligation Sequencing … to inhibit protein synthesis in bacteria. Previous studies showed resistance …