Surveillance of Listeria monocytogenes: early detection, population dynamics, and quasimetagenomic sequencing during selective enrichment

E Wagner, A Fagerlund, S Langsrud… - Applied and …, 2021 - Am Soc Microbiol
… with MDA and Nanopore sequencing can … of foodborne bacterial pathogens from raw
materials, environmental samples, and food products involve the isolation of the respective bacteria

[HTML][HTML] A shotgun metagenomics approach to detect and characterize unauthorized genetically modified microorganisms in microbial fermentation products

FE Buytaers, MA Fraiture, B Berbers… - Food Chemistry …, 2021 - Elsevier
… described for the successful characterization of food-borne pathogens at the strain level after
… optimal according to Oxford Nanopore’s guidelines for MinION sequencing. Nevertheless, …

Re-analysis of an outbreak of Shiga toxin-producing Escherichia coli O157:H7 associated with raw drinking milk using Nanopore sequencing

DR Greig, V Do Nascimento, DL Gally, SE Gharbia… - Scientific Reports, 2024 - nature.com
… and Oxford Nanopore Technology (ONT) sequencing data to … between strains of this zoonotic,
foodborne pathogen. … to de novo assemble pathogens into individual contigs containing a …

Application of a strain-level shotgun metagenomics approach on food samples: resolution of the source of a Salmonella food-borne outbreak

FE Buytaers, A Saltykova, W Mattheus… - Microbial …, 2021 - microbiologyresearch.org
… Use of metagenomic shotgun sequencing technology to detect foodborne pathogens within
the … Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of …

Foodborne Pathogen Detection Using Next-Generation Sequencing

CO Adetunji, OT Olaniyan, D Thangadurai… - Global Food …, 2023 - taylorfrancis.com
… last, nanopore-based sequencing employs a single molecule strategy which has been
commercialized by Oxford Nanopore … to foodborne pathogens for microbial genomics sequencing

Oxford nanopore technologies—a valuable tool to generate whole-genome sequencing data for in silico serotyping and the detection of genetic markers in Salmonella

C Thomas, U Methner, M Marz, J Linde - Frontiers in Veterinary …, 2023 - frontiersin.org
… Salmonella are food-borne pathogens causing over 1.35 million infections every year in the
… These Gram-negative microorganisms can often be found in the intestinal tract of animals …

Nanopore metatranscriptomics reveals cryptic catfish species as potential Shigella flexneri vectors in Kenya

AJ Tighe, S Grayson, J Byrne, S Hintikka, L Jessen… - Scientific Reports, 2022 - nature.com
sequencing platforms have been used previously to identify foodborne pathogens directly
… approach using nanopore sequencing has been used to detect a foodborne bacterial …

Characterization of Mobile Genetic Elements Using Long-Read Sequencing for Tracking Listeria monocytogenes from Food Processing Environments

HJ Kwon, Z Chen, P Evans, J Meng, Y Chen - Pathogens, 2020 - mdpi.com
… Recently developed nanopore sequencing technologies offer a unique opportunity to …
shotgun sequenced, and among them, five isolates were further subjected to long-read sequencing

Genomic analyses of multidrug-resistant Salmonella Indiana, Typhimurium, and Enteritidis isolates using MinION and MiSeq sequencing technologies

Z Chen, D Kuang, X Xu, N Gonzalez-Escalona… - PLoS …, 2020 - journals.plos.org
Nanopore sequencing technology that generates long reads can facilitate the completion of
… bacterial foodborne pathogens obtained using MinION and MiSeq sequencing technologies. …

Applications of sequencing technology in clinical microbial infection

X Yu, W Jiang, Y Shi, H Ye, J Lin - Journal of cellular and …, 2019 - Wiley Online Library
Food-borne pathogens are the major cause of morbidity and mortality worldwide. Next-…
of pathogenic microorganisms by 16S rRNA sequencing. Nanopore sequencing technology …