Evaluation of Identification and Molecular Characterization of Foodborne Pathogens by Whole Genome Sequencing Through Illumina and Nanopore

NJL Guerra - 2021 - search.proquest.com
As next-generation sequencing (NGS) costs has dropped in recent years, whole genome
sequencing (WGS) has been adopted as the primary typing method for pathogens of interest …

Evaluation of identification and molecular characterization of foodborne pathogens by whole genome sequencing through Illumina and Nanopore

NJ Lopez Guerra - 2021 - shareok.org
As next-generation sequencing (NGS) costs has dropped in recent years, whole genome
sequencing (WGS) has been adopted as the primary typing method for pathogens of interest …

Rapid, multiplexed, whole genome and plasmid sequencing of foodborne pathogens using long-read nanopore technology

TL Taylor, JD Volkening, E DeJesus, M Simmons… - Scientific reports, 2019 - nature.com
US public health agencies have employed next-generation sequencing (NGS) as a tool to
quickly identify foodborne pathogens during outbreaks. Although established short-read …

Whole genome sequencing in the palm of your hand: how to implement a MinION Galaxy-based workflow in a food safety laboratory for rapid Salmonella spp …

A Lamas, A Garrido-Maestu, A Prieto… - Frontiers in …, 2023 - frontiersin.org
Introduction Whole Genome Sequencing (WGS) implementation in food safety laboratories
is a significant advancement in food pathogen control and outbreak tracking. However, the …

Subtyping Evaluation of Salmonella Enteritidis Using Single Nucleotide Polymorphism and Core Genome Multilocus Sequence Typing with Nanopore Reads

Z Xian, S Li, DA Mann, Y Huang, F Xu… - Applied and …, 2022 - Am Soc Microbiol
Whole-genome sequencing (WGS) for public health surveillance and epidemiological
investigation of foodborne pathogens predominantly relies on sequencing platforms that …

The usefulness of nanopore sequencing in whole-genome sequencing-based genotyping of Listeria monocytogenes and Salmonella enterica serovar Enteritidis

YP Hong, BH Chen, YW Wang, RH Teng… - Microbiology …, 2024 - Am Soc Microbiol
Bacterial genotyping through whole-genome sequencing plays a crucial role in disease
surveillance and outbreak investigations in public health laboratories. This study assessed …

Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella

J Quick, P Ashton, S Calus, C Chatt, S Gossain… - Genome biology, 2015 - Springer
Abstract Background Foodborne outbreaks of Salmonella remain a pressing public health
concern. We recently detected a large outbreak of Salmonella enterica serovar Enteritidis …

Application of nanopore sequencing in the detection of foodborne microorganisms

Y Zhou, M Ren, P Zhang, D Jiang, X Yao, Y Luo… - Nanomaterials, 2022 - mdpi.com
Foodborne pathogens have become the subject of intense interest because of their high
incidence and mortality worldwide. In the past few decades, people have developed many …

Subtyping evaluation of Salmonella Enteritidis using SNP and core genome MLST with nanopore reads

Z Xian, S Li, DA Mann, Y Huang, F Xu, X Wu, S Tang… - bioRxiv, 2022 - biorxiv.org
Whole genome sequencing (WGS) for public health surveillance and epidemiological
investigation of foodborne pathogens predominantly relies on sequencing platforms that …

Next Generation Sequencing for the Detection of Foodborne Microbial Pathogens

TG Wentz, L Hu, TS Hammack, EW Brown… - … Attacks: Volume II, 2019 - Springer
Next generation sequencing (NGS) has become a central tool for pathogen detection since
the introduction of the first NGS platform over a decade ago. NGS has enabled the routine …