Automated ontology generation framework powered by linked biomedical ontologies for disease-drug domain

M Alobaidi, KM Malik, M Hussain - Computer methods and programs in …, 2018 - Elsevier
Objective and background: The exponential growth of the unstructured data available in
biomedical literature, and Electronic Health Record (EHR), requires powerful novel …

Linked open data-based framework for automatic biomedical ontology generation

M Alobaidi, KM Malik, S Sabra - BMC bioinformatics, 2018 - Springer
Background Fulfilling the vision of Semantic Web requires an accurate data model for
organizing knowledge and sharing common understanding of the domain. Fitting this …

Ontology-assisted database integration to support natural language processing and biomedical data-mining

JL Verschelde, MC Dos Santos, T Deray… - Journal of Integrative …, 2004 - degruyter.com
Successful biomedical data mining and information extraction require a complete picture of
biological phenomena such as genes, biological processes, and diseases; as these exist on …

An ontology driven approach for knowledge discovery in biomedicine

P Gottgtroy, N Kasabov, S MacDonell - 2004 - openrepository.aut.ac.nz
The explosion of biomedical data and the growing number of disparate data sources are
exposing researchers to a new challenge-how to acquire, maintain and share knowledge …

A methodology for biomedical ontology reuse

NZ Zulkarnain, F Meziane, G Crofts - … , NLDB 2016, Salford, UK, June 22 …, 2016 - Springer
The abundance of biomedical ontologies is beneficial to the development of biomedical
related systems. However, existing biomedical ontologies such as the National Cancer …

[HTML][HTML] Natural language processing methods and systems for biomedical ontology learning

K Liu, WR Hogan, RS Crowley - Journal of biomedical informatics, 2011 - Elsevier
While the biomedical informatics community widely acknowledges the utility of domain
ontologies, there remain many barriers to their effective use. One important requirement of …

[HTML][HTML] Text-mining approach to evaluate terms for ontology development

LC Tsoi, R Patel, W Zhao, WJ Zheng - Journal of biomedical informatics, 2009 - Elsevier
Developing ontologies to account for the complexity of biological systems requires the time
intensive collaboration of many participants with expertise in various fields. While each …

Biomedical ontologies in action: role in knowledge management, data integration and decision support

O Bodenreider - Yearbook of medical informatics, 2008 - thieme-connect.com
Objectives To provide typical examples of biomedical ontologies in action, emphasizing the
role played by biomedical ontologies in knowledge management, data integration and …

Evaluation of research in biomedical ontologies

R Hoehndorf, M Dumontier… - Briefings in …, 2013 - academic.oup.com
Ontologies are now pervasive in biomedicine, where they serve as a means to standardize
terminology, to enable access to domain knowledge, to verify data consistency and to …

A common layer of interoperability for biomedical ontologies based on OWL EL

R Hoehndorf, M Dumontier, A Oellrich… - …, 2011 - academic.oup.com
Motivation: Ontologies are essential in biomedical research due to their ability to
semantically integrate content from different scientific databases and resources. Their …