… By evaluating the chromatin landscape surrounding TSCs, we observed a consistent co-…
bp and were sequenced on an Illumina HiSeq 4000 system, generating paired-end reads of …

… transcribed DNA strand, resulting in high enrichment of sense RNAs downstream of transcription
start … PCR products were then subjected to size selection and paired-end sequencing (2 …

… Of these tumour-associated enhancer-based SVs, 20% (n=30) exhibited breakpoints localised
at H3K27ac-enriched promoter regions (±2.5 Kb from annotated transcription start sites (…

… damage across diverse pools of perturbed cells, followed by linked recovery of perturbation
identities and repair outcomes from individual cells by paired-end sequencing (Figure 1B). …

… Fourth, we generated contact maps with base-pair accuracy by directly sequencing the …
paired-end sequencing by sonicating the MNase 3C library to 200-bp fragments and sequencing …

… With paired-end sequencing, these short, capped RNAs provide high-resolution … maps
of transcription initiation at putative enhancers obtained with GRO-cap, PRO-cap, and Start-seq …

… with sequencing (Stacc–seq), we investigated the landscapes of … TSS, transcription start site.
b, UCSC browser views and heat … For paired-end reads, SNP information from both reads in …

… Having mapped the transcription initiation landscape of PEL cells, we intersected FAIRE-seq
and CTCF chromatin immunoprecipitation sequencing (ChIP-seq) data sets with the …

… the transcriptome and open chromatin landscapes in the major cell … around transcription start
sites (TSSs) and transcription … bwa mem’ to map the two ends of one paired-end read to the …

… Hi-C\Micro-C unique paired-end reads (which we will refer to … Samples were paired-end
sequenced (read length = 150 bp) … define the position of transcription initiation at each of these …