A guide to conquer the biological network era using graph theory

M Koutrouli, E Karatzas, D Paez-Espino… - … in bioengineering and …, 2020 - frontiersin.org
… represent biologicalgraph theory concepts and the various graph types, as well as the
available data structures for storing and reading graphs. In addition, we describe several network

A conceptual map of invasion biology: Integrating hypotheses into a consensus network

M Enders, F Havemann, F Ruland… - Global Ecology and …, 2020 - Wiley Online Library
… Although useful for providing a first overview, these previous approaches to creating
hypothesis networks in invasion biology had several limitations that were overcome by our …

Analysing ecological networks of species interactions

E Delmas, M Besson, MH Brice, LA Burkle… - Biological …, 2019 - Wiley Online Library
… We expect there is even more to gain by using graph theory to account for structure at …
Nevertheless, knowledge of network structure allows us to partition out the effect of every …

Foundations of chemical reaction network theory

M Feinberg - 2019 - Springer
… purest way, unobscured by thermal effects. I have tried to tell a … early days of reaction network
theory in the Acknowledgments. … Although this book is not explicitly biological, it has some …

Computational network biology: data, models, and applications

C Liu, Y Ma, J Zhao, R Nussinov, YC Zhang, F Cheng… - Physics Reports, 2020 - Elsevier
… have long been central to our understanding of biological systems, in the form of linkage …
network biology, first introducing various types of biological networks and network structural …

Cognitive network science: A review of research on cognition through the lens of network representations, processes, and dynamics

CSQ Siew, DU Wulff, NM Beckage, YN Kenett - Complexity, 2019 - Wiley Online Library
Network science is based on mathematical graph theory and … been shown to have measurable
effects on human behavior. … -world networks across diverse domains including biological

The structure of ecological networks across levels of organization

PR Guimaraes Jr - Annual Review of Ecology, Evolution, and …, 2020 - annualreviews.org
… in ecological networks across multiple levels of biological … basic patterns predicted by
network theory emerge at the … Finally, I discuss the implications of network structures for our …

Circuit‐theory applications to connectivity science and conservation

BG Dickson, CM Albano, R Anantharaman… - … biology, 2019 - Wiley Online Library
… We believe the impact of circuit theory and Circuitscape on conservation has come from
not only the theoretical basis and elegance of the approach, but also from the powerful …

Application of graph theory for identifying connectivity patterns in human brain networks: a systematic review

FV Farahani, W Karwowski, NR Lighthall - frontiers in Neuroscience, 2019 - frontiersin.org
… Results: Our results show that graph theory and its implications … Although graph theoretical
approach can be generally … many social, biological, and geoscience-based networks have a …

Percolation on complex networks: Theory and application

M Li, RR Liu, L Lü, MB Hu, S Xu, YC Zhang - Physics Reports, 2021 - Elsevier
… In the last two decades, network science has blossomed and influenced various fields, such
as statistical physics, computer science, biology and sociology, from the perspective of the …