Large-scale rare variant burden testing in Parkinson's disease

MB Makarious, J Lake, V Pitz, A Ye Fu, JL Guidubaldi… - Brain, 2023 - academic.oup.com
… , 1 while familial studies identified rare variants in the same genes resulting in … using whole
genome (WGS) and whole exome sequencing (WES) to facilitate the analysis of rare variants

Exome-wide evaluation of rare coding variants using electronic health records identifies new gene–phenotype associations

J Park, AM Lucas, X Zhang, K Chaudhary, JH Cho… - Nature medicine, 2021 - nature.com
… By leveraging 10,900 whole-exome sequences linked to … Aggregation of multiple rare variants
in a gene (that is, gene burden… We collapsed rare pLOF variants into gene burdens across

Calibrated rare variant genetic risk scores for complex disease prediction using large exome sequence repositories

R Lali, M Chong, A Omidi… - Nature …, 2021 - nature.com
rare variant burden over a large number of genes can be combined into a predictive rare
variant … gene-based association, we conducted a series of simulations and determined the CF’s …

Genome-wide rare variant analysis for thousands of phenotypes in over 70,000 exomes from two cohorts

ET Cirulli, S White, RW Read, G Elhanan… - Nature …, 2020 - nature.com
… (SKAT), or unified tests that can consider both a burden and … of including rare variants from
exome sequence data in … and identifying associations that could not have been discovered

The burden of candidate pathogenic variants for kidney and genitourinary disorders emerging from exome sequencing

HM Rasouly, EE Groopman… - Annals of internal …, 2019 - acpjournals.org
… We found that rare variants previously reported as pathogenic accounted for most of the
annotation burden, necessitating time-intensive manual curation of the supporting primary …

Personalised virtual gene panels reduce interpretation workload and maintain diagnostic rates of proband-only clinical exome sequencing for rare disorders

LP Molina-Ramírez, C Kyle, JM Ellingford… - Journal of Medical …, 2022 - jmg.bmj.com
burden, we found that retaining very low frequency variants that occur in <0.1% of the … half
of the variants detected in our study were LOF and/or previously reported variants at the time …

Rare variant contribution to human disease in 281,104 UK Biobank exomes

Q Wang, RS Dhindsa, K Carss, AR Harper, A Nag… - Nature, 2021 - nature.com
Exome sequencing has revolutionized our understanding of … Our variant-level association
tests detected rare variant associations … in these genes contributed to disease burden. This is …

Exome sequencing and analysis of 454,787 UK Biobank participants

JD Backman, AH Li, A Marcketta, D Sun, J Mbatchou… - Nature, 2021 - nature.com
… We illustrate the ability of exome sequencing to identify gene–trait associations, elucidate …
We aggregated rare variants for gene burden testing as previously described 39 . In brief, …

Whole-genome sequencing of patients with rare diseases in a national health system

E Turro, WJ Astle, K Megy, S Gräf, D Greene… - Nature, 2020 - nature.com
… We have initiated WGS of UK Biobank participants to identify rare variant associations with
participants in the extreme tails of a quantitative phenotype who are typically excluded from …

[HTML][HTML] Toward clinical implementation of next-generation sequencing-based genetic testing in rare diseases: where are we?

Z Liu, L Zhu, R Roberts, W Tong - Trends in Genetics, 2019 - cell.com
… to the diagnosis of rare diseases poses an immense burden and psychological … for rare
diseases and are incrementally becoming the first-line option for causative variants identification, …