Conserved Noncoding Elements Evolve Around the Same Genes Throughout Metazoan Evolution

P Gonzalez, QC Hauck… - … Biology and Evolution, 2024 - academic.oup.com
… dozens of genomes from three invertebrate phyla, providing genome-wide maps of potential
cis-regulatory elements. In … Evolutionarily conserved sequences on human chromosome 21. …

Monophyletic origin and divergent evolution of animal telomerase RNA

D Logeswaran, Y Li, JD Podlevsky… - … biology and evolution, 2021 - academic.oup.com
… This dramatic size expansion in vertebrate and fungal TRs … TR genes in many metazoan
species has been challenging and unsuccessful, which limits our understanding of TR evolution

[PDF][PDF] Eukaryotic pangenomes

GF Richard - … : Diversity, Dynamics and Evolution of Genomes, 2020 - library.oapen.org
… Phylogenetic studies of 21 fungal genomes showed that these megasatellites were uniquely
found in C. glabrata , but their presence among other members of the Nakaseomyces has …

[HTML][HTML] Evolution of Mutator transposable elements across eukaryotic diversity

M Dupeyron, KS Singh, C Bass, A Hayward - Mobile DNA, 2019 - Springer
… Our results strongly suggest that a supposed element from the genome of the pathogenic
yeast Candida albicans (Additional file 1, group 2), should be excluded from the Phantom …

Paleozoic protein fossils illuminate the evolution of vertebrate genomes and transposable elements

MC Frith - Molecular biology and evolution, 2022 - academic.oup.com
… Some ancient fossils suggest “genome tectonics,” … vertebrates, producing new genes and
regulatory elements on the way. Host-gene fossils too have contributed anciently conserved

Evolutionary diversification of ancestral genes across vertebrates and insects

F Mantica, M Irimia - bioRxiv, 2024 - biorxiv.org
… approximately 7,000 highly conserved genes shared between vertebrates and insects, and
we … sets of genes underwent differential diversification during vertebrate and insect evolution, …

Fungal evolution: major ecological adaptations and evolutionary transitions

MA Naranjo‐Ortiz, T Gabaldón - Biological Reviews, 2019 - Wiley Online Library
… and yeasts). Throughout this review we use an evolutionary and comparative-genomics
perspective to understand fungal ecological diversity. Finally, we highlight the importance of …

A genome alignment of 120 mammals highlights ultraconserved element variability and placenta-associated enhancers

N Hecker, M Hiller - Gigascience, 2020 - academic.oup.com
conserved genomic elements are across placental mammals. We focused on a subset of highly
conserved elements, called ultraconserved elements … several of these elements does not …

[HTML][HTML] Transposable elements contribute to cell and species-specific chromatin looping and gene regulation in mammalian genomes

AG Diehl, N Ouyang, AP Boyle - Nature communications, 2020 - nature.com
… Because it is notoriously difficult to reliably assign distal regulatory elements to their
target genes, we first wanted to isolate a subset of loops representing likely enhancer–promoter …

Origin and evolution of the neuroendocrine control of reproduction in vertebrates, with special focus on genome and gene duplications

S Dufour, B Quérat, H Tostivint… - Physiological …, 2020 - journals.physiology.org
evolution of the vertebrate gonadotropic axis. Brain-pituitary neuroendocrine axes are typical
of vertebrates… on peripheral organs, being a vertebrate innovation. The paper reviews, from …