It is time to apply biclustering: a comprehensive review of biclustering applications in biological and biomedical data

J Xie, A Ma, A Fennell, Q Ma, J Zhao - Briefings in bioinformatics, 2019 - academic.oup.com
… proportion of enriched biclusters on real data sets. Adetayo … level, to pathway/module level,
and even global networks. … heterogeneous experimental data, and then built a module graph, …

A Bayesian two-way latent structure model for genomic data integration reveals few pan-genomic cluster subtypes in a breast cancer cohort

DM Swanson, T Lien, H Bergholtz, T Sørlie… - …, 2019 - academic.oup.com
… implementation which performs inference on all parameters. … the rest grouped into a more
heterogeneous cluster we called ‘… tumors from TCGA, genome-wide analysis therefore may …

Robust knowledge-guided biclustering for multi-omics data

Q Zhang, C Chang, Q Long - Briefings in Bioinformatics, 2024 - academic.oup.com
… information from heterogeneous multi-modal data. … real data analysis that integrated SNP
and gene expression … to AD based on existing genome-wide association studies (GWAS) of AD …

[PDF][PDF] TuBA: tunable biclustering algorithm reveals clinically relevant tumor transcriptional profiles in breast cancer

A Singh, G Bhanot, H Khiabanian - Gigascience, 2019 - academic.oup.com
… expression datasets associated with heterogeneous diseases. … by other biclustering methods,
would enable a comprehensive … Cluster analysis and display of genome-wide expression …

Tunable Biclustering Algorithm for Analyzing Large Gene Expression Data Sets

A Singh - 2019 - search.proquest.com
… to highlight the tremendous heterogeneity in alterations within … of samples are called
genome-wide techniques. In particular, … Over the last decade and a half, comprehensive

Deep surveys of transcriptional modules with Massive Associative K-biclustering (MAK)

MP Joachimiak, C Tuglus, R Salamzade… - bioRxiv, 2022 - biorxiv.org
… discovery and regulatory network inference but they are also … its data type integration
capabilities through biclustering yeast … Singular value decomposition for genome-wide expression …

RecBic: a fast and accurate algorithm recognizing trend-preserving biclusters

X Liu, D Li, J Liu, Z Su, G Li - Bioinformatics, 2020 - academic.oup.com
… tools on datasets in which implanted biclusters have their … globally optimizes the solutions
in each iteration. To our best knowledge, RecBic is the first to identify a bicluster with a global

ARBic: an all-round biclustering algorithm for analyzing gene expression data

X Liu, T Yu, X Zhao, C Long, R Han… - NAR Genomics and …, 2023 - academic.oup.com
… ARBic achieves this goal by integrating our earlier RecBic … thus could help infer underlying
gene regulatory networks. … first to iteratively identify a bicluster with a global optimum in each …

UnPaSt: unsupervised patient stratification by differentially expressed biclusters in omics data

M Hartung, A Maier, F Delgado-Chaves… - arXiv preprint arXiv …, 2024 - arxiv.org
… the influence of unaccounted heterogeneity on performance … Therefore, to get a more
comprehensive method performance … Non-deterministic methods were executed five times to infer

Identification of differentially expressed gene modules in heterogeneous diseases

O Zolotareva, S Khakabimamaghani, OI Isaeva… - …, 2021 - academic.oup.com
… one of the most comprehensive and frequently updated gene … all biclusters found by each
method in TCGA-BRCA datasets … We applied DESMOND to synthetic and real-world datasets