Understanding the Structure–Activity Relationship through Density Functional Theory: A Simple Method Predicts Relative Binding Free Energies of Metalloenzyme …

S Vasile, K Roos - ACS omega, 2023 - ACS Publications
… in the binding site of the influenza RNA polymerase PA N endonuclease. We modeled the
… RNA polymerase complex. This highly conserved domain regulates the lifecycle of the virus, …

Inhibiting HCMV pUL89-C Endonuclease with Metal-Binding Compounds: Miniperspective

AD Jagtap, RJ Geraghty, Z Wang - Journal of medicinal chemistry, 2023 - ACS Publications
… drugs include nucleotide analogue of cytosine monophosphate, … to the endonuclease domain
(pUL89-C) remain unknown. … series of potent influenza virus PA endonuclease inhibitors …

Hantavirus replication cycle—An updated structural virology perspective

K Meier, SR Thorkelsson, ERJ Quemin, M Rosenthal - Viruses, 2021 - mdpi.com
… with a uridine monophosphate, suggesting initiation via a … , this domain is similar to the
endonucleases of the influenza … a helical RNP-like structure with tri-nucleotide RNAs (orange) …

Prokaryotic innate immunity through pattern recognition of conserved viral proteins

LA Gao, ME Wilkinson, J Strecker, KS Makarova… - Science, 2022 - science.org
… universally use nucleotide binding oligomerization domain–… Selected structures of activated
complexes are shown as … N-terminal effector domains, including DNA endonucleases, to …

[HTML][HTML] Not making the cut: Techniques to prevent RNA cleavage in structural studies of RNase–RNA complexes

SP Jones, C Goossen, SD Lewis, AM Delaney… - Journal of Structural …, 2022 - Elsevier
… activated oxygen that breaks a nucleotide linking OP bond. The … structure of the N-terminal
domain of the PA endonuclease (… crystal structure of Influenza A PA N endonuclease bound to …

Antiviral potential of natural resources against influenza virus infections

J Eichberg, E Maiworm, M Oberpaul, V Czudai-Matwich… - Viruses, 2022 - mdpi.com
… PB2 forms the viral RNA polymerase complex [39]. The endonuclease activity of PA is
responsible … antiviral activity, including influenza, was found for the nucleosides formycin A and B …

Structural insights into viral genome replication by the severe fever with thrombocytopenia syndrome virus L protein

HM Williams, SR Thorkelsson, D Vogel… - Nucleic acids …, 2023 - academic.oup.com
… realignment results in an extra G nucleotide at the 5′ end of the … the structure of the
heterotrimeric influenza virus polymerase … However, in this structure, we see the endonuclease in …

Targeting Metalloenzymes: The “Achilles' Heel” of Viruses and Parasites

D Moianos, GM Prifti, M Makri, G Zoidis - Pharmaceuticals, 2023 - mdpi.com
… -dependent PA N endonuclease domain of the enzyme, is an … not only block the influenza
PA N endonuclease but also the … formation of the nucleotide monophosphate product and the …

Computing metal‐binding proteins for therapeutic benefit

A Spinello, J Borišek, M Pavlin, P Janoš… - …, 2021 - Wiley Online Library
endonuclease domain of the polymerase, highly conserved among various historic influenza
… is trapped by the PB2 domain and cleaved at the 8–14 nucleotide to serve as a primer for …

Mechanism and spectrum of inhibition of a 4′-cyano modified nucleotide analog against diverse RNA polymerases of prototypic respiratory RNA viruses

CJ Gordon, SM Walker, EP Tchesnokov, D Kocincova… - bioRxiv, 2024 - biorxiv.org
… C-adenosine monophosphate prodrug derived from the parent nucleoside GS-441524 (Fig. …
the trimeric influenza replication complex, possessing an N-terminus endonuclease, RdRp …