Open-source tools for processing and analysis of in vitro extracellular neuronal signals

M Mahmud, S Vassanelli - In Vitro Neuronal Networks: From Culturing …, 2019 - Springer
batch preprocessing of CPU-intensive operations for each channel (eg, filtering, multiunit
activity detection, spike sorting, etc.), in parallel, by … framework that allows preprocessing and …

[PDF][PDF] An analysis platform and tools to understand the dynamics of neuronal encoding in rodents

MN Islam - 2019 - tara.tcd.ie
framework that incorporates analytical methods for the study of cognitive map represented
by neurons … to cognitive mapping that also incorporates batch processing of large amounts of …

Towards automated processing and analysis of neuronal big data acquired using high-resolution brain-chip interfaces

M Mahmud, C Cecchetto, M Maschietto… - … Brain Mapping: Methods …, 2020 - Springer
… Given that the parallel recording of signals at multiple scales … data intensive theoretical
frameworks capable of modelling the … neuronal probes and their use in recording extracellular

Meanalyzer–a spike train analysis tool for multi electrode arrays

RM Dastgheyb, SW Yoo, NJ Haughey - Neuroinformatics, 2020 - Springer
… from cultured neurons or slice cultures, there is a general lack of available analysis tools. …
interpretation of how experimental manipulations modify neural network activity. Here, we …

MEA-toolbox: an open source toolbox for standardized analysis of multi-electrode array data

M Hu, M Frega, EA Tolner… - Neuroinformatics, 2022 - Springer
… A multi-electrode array (MEA) is a device containing multiple microelectrodes through which
extracellular voltage changes from neuronal networks can be measured. MEAs for in vitro …

Neural network-based artifact detection in local field potentials recorded from chronically implanted neural probes

M Fabietti, M Mahmud, A Lotfi, A Averna… - … on Neural Networks …, 2020 - ieeexplore.ieee.org
… Giugliano, “QSpike tools: a generic framework for parallel batch preprocessing of extracellular
neuronal signals recorded by substrate microelectrode arrays,” Front. Neuroinform., vol. 8, …

Low-impedance 3D PEDOT: PSS ultramicroelectrodes

PD Jones, A Moskalyuk, C Barthold… - Frontiers in …, 2020 - frontiersin.org
… the signal quality of extracellular recordings and exhibits higher … is a promising tool for
study of neuronal networks. … of highly parallel, non-invasive, intracellular-like recordings by …

An overview of in vitro biological neural networks for robot intelligence

Z Chen, Q Liang, Z Wei, X Chen, Q Shi… - Cyborg and Bionic …, 2023 - spj.science.org
… thereby are run not in sequence, but in parallel. In this case, system delay can be … intracellular
potential, the neural activity of the neuron can be detected by recording the intracellular

Induced pluripotent stem cell-derived motor neurons of CMT type 2 patients reveal progressive mitochondrial dysfunction

J Van Lent, P Verstraelen, B Asselbergh… - Brain, 2021 - academic.oup.com
… along with extracellular electrophysiological abnormalities in the differentiated motor
neurons. … Action potential and network-burst detection was carried out using the QSpike Tools

The effect of pharmacological inhibition of Serine Proteases on neuronal networks in vitro

S Van De Vijver, S Missault, J Van Soom… - PeerJ, 2019 - peerj.com
Neurons are embedded in an extracellular matrix (ECM), which functions both as a scaffold
and as a regulator of neuronal function. … This was revealed by pre-processing the data and …