Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space

MC Schatz, AA Philippakis, E Afgan, E Banks, VJ Carey… - Cell Genomics, 2022 - cell.com
Summary The NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-
space (AnVIL; https://anvilproject. org) was developed to address a widespread community …

Data lakes, clouds, and commons: a review of platforms for analyzing and sharing genomic data

RL Grossman - Trends in Genetics, 2019 - cell.com
Data commons collate data with cloud computing infrastructure and commonly used
software services, tools, and applications to create biomedical resources for the large-scale …

GA4GH: International policies and standards for data sharing across genomic research and healthcare

HL Rehm, AJH Page, L Smith, JB Adams, G Alterovitz… - Cell genomics, 2021 - cell.com
Summary The Global Alliance for Genomics and Health (GA4GH) aims to accelerate
biomedical advances by enabling the responsible sharing of clinical and genomic data …

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update

V Jalili, E Afgan, Q Gu, D Clements… - Nucleic acids …, 2020 - academic.oup.com
Abstract Galaxy (https://galaxyproject. org) is a web-based computational workbench used
by tens of thousands of scientists across the world to analyze large biomedical datasets …

The iPlant collaborative: cyberinfrastructure for enabling data to discovery for the life sciences

N Merchant, E Lyons, S Goff, M Vaughn, D Ware… - PLoS …, 2016 - journals.plos.org
The iPlant Collaborative provides life science research communities access to
comprehensive, scalable, and cohesive computational infrastructure for data management; …

GenPipes: an open-source framework for distributed and scalable genomic analyses

M Bourgey, R Dali, R Eveleigh, KC Chen… - …, 2019 - academic.oup.com
Background With the decreasing cost of sequencing and the rapid developments in
genomics technologies and protocols, the need for validated bioinformatics software that …

Integrated genome browser: visual analytics platform for genomics

NH Freese, DC Norris, AE Loraine - Bioinformatics, 2016 - academic.oup.com
Motivation: Genome browsers that support fast navigation through vast datasets and provide
interactive visual analytics functions can help scientists achieve deeper insight into …

Uniform genomic data analysis in the NCI Genomic Data Commons

Z Zhang, K Hernandez, J Savage, S Li, D Miller… - Nature …, 2021 - nature.com
The goal of the National Cancer Institute's (NCI's) Genomic Data Commons (GDC) is to
provide the cancer research community with a data repository of uniformly processed …

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update

Nucleic Acids Research, 2022 - academic.oup.com
Galaxy is a mature, browser accessible workbench for scientific computing. It enables
scientists to share, analyze and visualize their own data, with minimal technical …

Bionimbus: a cloud for managing, analyzing and sharing large genomics datasets

AP Heath, M Greenway, R Powell… - Journal of the …, 2014 - academic.oup.com
Background As large genomics and phenotypic datasets are becoming more common, it is
increasingly difficult for most researchers to access, manage, and analyze them. One …