Where are the disease-associated eQTLs?

BD Umans, A Battle, Y Gilad - Trends in Genetics, 2021 - cell.com
Most disease-associated variants, although located in putatively regulatory regions, do not
have detectable effects on gene expression. One explanation could be that we have not …

[HTML][HTML] From genome to function by studying eQTLs

HJ Westra, L Franke - Biochimica et Biophysica Acta (BBA)-molecular basis …, 2014 - Elsevier
Genome-wide association studies (GWASs) have shown a large number of genetic variants
to be associated with complex diseases. The identification of the causal variant within an …

Revealing the architecture of gene regulation: the promise of eQTL studies

Y Gilad, SA Rifkin, JK Pritchard - Trends in genetics, 2008 - cell.com
Expression quantitative trait loci (eQTL) mapping studies have become a widely used tool
for identifying genetic variants that affect gene regulation. In these studies, expression levels …

Functional architectures of local and distal regulation of gene expression in multiple human tissues

X Liu, HK Finucane, A Gusev, G Bhatia, S Gazal… - The American Journal of …, 2017 - cell.com
Genetic variants that modulate gene expression levels play an important role in the etiology
of human diseases and complex traits. Although large-scale eQTL mapping studies routinely …

Mapping complex disease traits with global gene expression

W Cookson, L Liang, G Abecasis, M Moffatt… - Nature Reviews …, 2009 - nature.com
Variation in gene expression is an important mechanism underlying susceptibility to
complex disease. The simultaneous genome-wide assay of gene expression and genetic …

Dissecting the genetics of the human transcriptome identifies novel trait-related trans-eQTLs and corroborates the regulatory relevance of non-protein coding loci

H Kirsten, H Al-Hasani, L Holdt, A Gross… - Human molecular …, 2015 - academic.oup.com
Genetics of gene expression (eQTLs or expression QTLs) has proved an indispensable tool
for understanding biological pathways and pathomechanisms of trait-associated SNPs …

Using an atlas of gene regulation across 44 human tissues to inform complex disease-and trait-associated variation

ER Gamazon, AV Segrè, M Van De Bunt, X Wen… - Nature …, 2018 - nature.com
We apply integrative approaches to expression quantitative loci (eQTLs) from 44 tissues
from the Genotype-Tissue Expression project and genome-wide association study data …

Landscape of allele-specific transcription factor binding in the human genome

S Abramov, A Boytsov, D Bykova, DD Penzar… - Nature …, 2021 - nature.com
Sequence variants in gene regulatory regions alter gene expression and contribute to
phenotypes of individual cells and the whole organism, including disease susceptibility and …

The genetic and mechanistic basis for variation in gene regulation

AA Pai, JK Pritchard, Y Gilad - PLoS genetics, 2015 - journals.plos.org
It is now well established that noncoding regulatory variants play a central role in the
genetics of common diseases and in evolution. However, until recently, we have known little …

Redefining tissue specificity of genetic regulation of gene expression in the presence of allelic heterogeneity

M Arvanitis, K Tayeb, BJ Strober, A Battle - The American Journal of …, 2022 - cell.com
Uncovering the functional impact of genetic variation on gene expression is important in
understanding tissue biology and the pathogenesis of complex traits. Despite large efforts to …