Systematic assessment of regulatory effects of human disease variants in pluripotent cells

MJ Bonder, C Smail, MJ Gloudemans, L Frésard… - bioRxiv, 2019 - biorxiv.org
Identifying regulatory genetic effects in pluripotent cells provides important insights into
disease variants with potentially transient or developmental origins. Combining existing and …

Identification of rare and common regulatory variants in pluripotent cells using population-scale transcriptomics

MJ Bonder, C Smail, MJ Gloudemans, L Frésard… - Nature …, 2021 - nature.com
Induced pluripotent stem cells (iPSCs) are an established cellular system to study the impact
of genetic variants in derived cell types and developmental contexts. However, in their …

Single cell eQTL analysis identifies cell type-specific genetic control of gene expression in fibroblasts and reprogrammed induced pluripotent stem cells

D Neavin, Q Nguyen, MS Daniszewski, HH Liang… - Genome biology, 2021 - Springer
Background The discovery that somatic cells can be reprogrammed to induced pluripotent
stem cells (iPSCs) has provided a foundation for in vitro human disease modelling, drug …

Impact of regulatory variation across human iPSCs and differentiated cells

NE Banovich, YI Li, A Raj, MC Ward… - Genome …, 2018 - genome.cshlp.org
Induced pluripotent stem cells (iPSCs) are an essential tool for studying cellular
differentiation and cell types that are otherwise difficult to access. We investigated the use of …

Concise review: induced pluripotent stem cell research in the era of precision medicine

T Hamazaki, N El Rouby, NC Fredette… - Stem Cells, 2017 - academic.oup.com
Recent advances in DNA sequencing technologies are revealing how human genetic
variations associate with differential health risks, disease susceptibilities, and drug …

Investigating monogenic and complex diseases with pluripotent stem cells

H Zhu, MW Lensch, P Cahan, GQ Daley - Nature Reviews Genetics, 2011 - nature.com
Human genetic studies have revealed the molecular basis of countless monogenic diseases
but have been less successful in associating phenotype to genotype in complex multigenic …

[HTML][HTML] Induced pluripotent stem cells as a next-generation biomedical interface

KE Hankowski, T Hamazaki, A Umezawa… - Laboratory …, 2011 - Elsevier
Recent advances in DNA sequencing technologies and subsequent progress in genome-
wide association study (GWAS) are rapidly changing the landscape of human diseases. Our …

Transcriptomic analysis of pluripotent stem cells: insights into health and disease

JC Yeo, HH Ng - Genome Medicine, 2011 - Springer
Embryonic stem cells (ESCs) and induced pluripotent stem cells (iPSCs) hold tremendous
clinical potential because of their ability to self-renew, and to differentiate into all cell types of …

Insights into the mutational burden of human induced pluripotent stem cells from an integrative multi-omics approach

M D'Antonio, P Benaglio, D Jakubosky, WW Greenwald… - Cell reports, 2018 - cell.com
To understand the mutational burden of human induced pluripotent stem cells (iPSCs), we
sequenced genomes of 18 fibroblast-derived iPSC lines and identified different classes of …

Humanity in a dish: population genetics with iPSCs

CR Warren, CA Cowan - Trends in cell biology, 2018 - cell.com
Induced pluripotent stem cells (iPSCs) are powerful tools for investigating the relationship
between genotype and phenotype. Recent publications have described iPSC cohort studies …