Molecular dynamics simulations provide insights into the origin of gleevec's selectivity toward human tyrosine kinases

L Wang, G Zheng, X Liu, D Ni, X He… - Journal of …, 2019 - Taylor & Francis
Protein kinases are critical drug targets against cancer. Since the discovery of Gleevec, a
specific inhibitor of Abl kinase, the capability of this drug to distinguish between Abl and …

Explaining why Gleevec is a specific and potent inhibitor of Abl kinase

YL Lin, Y Meng, W Jiang… - Proceedings of the …, 2013 - National Acad Sciences
Tyrosine kinases present attractive drug targets for specific types of cancers. Gleevec, a well-
known therapeutic agent against chronic myelogenous leukemia, is an effective inhibitor of …

Computational study of Gleevec and G6G reveals molecular determinants of kinase inhibitor selectivity

YL Lin, Y Meng, L Huang, B Roux - Journal of the American …, 2014 - ACS Publications
Gleevec is a potent inhibitor of Abl tyrosine kinase but not of the highly homologous c-Src
kinase. Because the ligand binds to an inactive form of the protein in which an Asp-Phe-Gly …

Energetic dissection of Gleevec's selectivity toward human tyrosine kinases

RV Agafonov, C Wilson, R Otten, V Buosi… - Nature structural & …, 2014 - nature.com
Protein kinases are obvious drug targets against cancer, owing to their central role in
cellular regulation. Since the discovery of Gleevec, a potent and specific inhibitor of Abl …

Computational analysis of the binding specificity of Gleevec to Abl, c-Kit, Lck, and c-Src tyrosine kinases

YL Lin, B Roux - Journal of the American Chemical Society, 2013 - ACS Publications
Gleevec, a well-known cancer therapeutic agent, is an effective inhibitor of several tyrosine
kinases, including Abl and c-Kit, but displays less potency to inhibit closely homologous …

Using ancient protein kinases to unravel a modern cancer drug's mechanism

C Wilson, RV Agafonov, M Hoemberger, S Kutter… - Science, 2015 - science.org
Macromolecular function is rooted in energy landscapes, where sequence determines not a
single structure but an ensemble of conformations. Hence, evolution modifies a protein's …

Atomistic modeling of the ABL kinase regulation by allosteric modulators using structural perturbation analysis and community-based network reconstruction of …

L Astl, GM Verkhivker - Journal of Chemical Theory and …, 2019 - ACS Publications
In this work, we have examined the molecular mechanisms of allosteric regulation of the
ABL tyrosine kinase at the atomic level. Atomistic modeling of the ABL complexes with a …

Predicting the conformational variability of Abl tyrosine kinase using molecular dynamics simulations and Markov state models

Y Meng, C Gao, DK Clawson, S Atwell… - Journal of chemical …, 2018 - ACS Publications
Understanding protein conformational variability remains a challenge in drug discovery. The
issue arises in protein kinases, whose multiple conformational states can affect the binding …

Molecular determinants underlying binding specificities of the ABL kinase inhibitors: combining alanine scanning of binding hot spots with network analysis of residue …

A Tse, GM Verkhivker - PloS one, 2015 - journals.plos.org
Quantifying binding specificity and drug resistance of protein kinase inhibitors is of
fundamental importance and remains highly challenging due to complex interplay of …

Molecular insights on ABL kinase activation using tree-based machine learning models and molecular docking

PO Fernandes, DM Martins, A de Souza Bozzi… - Molecular Diversity, 2021 - Springer
Abelson kinase (c-Abl) is a non-receptor tyrosine kinase involved in several biological
processes essential for cell differentiation, migration, proliferation, and survival. This …