Navigating Multi-scale Cancer Systems Biology towards Model-driven Personalized Therapeutics

MN Gondal, SU Chaudhary - bioRxiv, 2021 - biorxiv.org
Rapid advancements in high-throughput omics technologies and experimental protocols
have led to the generation of vast amounts of biomolecular data on cancer that now …

[HTML][HTML] Navigating multi-scale cancer systems biology towards model-driven clinical oncology and its applications in personalized therapeutics

MN Gondal, SU Chaudhary - Frontiers in Oncology, 2021 - frontiersin.org
Rapid advancements in high-throughput omics technologies and experimental protocols
have led to the generation of vast amounts of scale-specific biomolecular data on cancer …

[HTML][HTML] Systems biology and experimental model systems of cancer

GD Yalcin, N Danisik, RC Baygin, A Acar - Journal of Personalized …, 2020 - mdpi.com
Over the past decade, we have witnessed an increasing number of large-scale studies that
have provided multi-omics data by high-throughput sequencing approaches. This has …

TISON: a next-generation multi-scale modeling theatre for in silico systems oncology

MN Gondal, MU Sultan, A Arif, A Rehman, HA Awan… - BioRxiv, 2021 - biorxiv.org
Multi-scale models integrating biomolecular data from genetic, transcriptional, and
translational levels, coupled with extracellular microenvironments can assist in decoding the …

[HTML][HTML] Integration of transcriptomics data into agent-based models of solid tumor metastasis

J Retzlaff, X Lai, C Berking, J Vera - Computational and structural …, 2023 - Elsevier
Recent progress in our understanding of cancer mostly relies on the systematic profiling of
patient samples with high-throughput techniques like transcriptomics. With this approach …

Cancer systems biology: embracing complexity to develop better anticancer therapeutic strategies

W Du, O Elemento - Oncogene, 2015 - nature.com
The transformation of normal cells into cancer cells and maintenance of the malignant state
and phenotypes are associated with genetic and epigenetic deregulations, altered cellular …

[HTML][HTML] Cancer systems biology

J Espinal-Enríquez, C Rangel-Escareño… - Frontiers in …, 2022 - frontiersin.org
Cancer has been a paradigmatic example of a complex disease. It is the second leading
cause of death worldwide. Knowledge acquired on the mechanisms and potential causes …

Systems biology and personalized medicine in cancer

K Mani - Current Pharmacogenomics and Personalized …, 2010 - ingentaconnect.com
Cancer is a heterogeneous disease, originating in different tissues and involving a number
of distinct molecular pathways. With the growing availability of high-throughput biological …

CanSeer: A Method for Development and Clinical Translation of Personalized Cancer Therapeutics

RN Butt, B Amina, MU Sultan, ZB Tanveer, R Hussain… - bioRxiv, 2022 - biorxiv.org
Computational modeling and analysis of biomolecular network models annotated with
cancer patient-specific multi-omics data can enable the development of personalized …

Prospects and challenges of cancer systems medicine: from genes to disease networks

MR Karimi, AH Karimi, S Abolmaali… - Briefings in …, 2022 - academic.oup.com
It is becoming evident that holistic perspectives toward cancer are crucial in deciphering the
overwhelming complexity of tumors. Single-layer analysis of genome-wide data has greatly …