Artificial Intelligence (AI) Optimized Systems Modeling for the Deeper Understanding of Human Cancers

Z Ji, S Tao, B Wang - Frontiers in Bioengineering and Biotechnology, 2021 - frontiersin.org
Cancer research in the field of Computational Systems Biology attempts to address
questions that will advance current knowledge in the mechanisms of cancer progression or …

Systems Biology in Drug Discovery: Using Predictive Biomedicine to Guide Development Choices for Novel Agents in Cancer

G Tucker-Kellogg, A Aggarwal, K Blanchard… - Systems …, 2010 - Elsevier
Publisher Summary This chapter discusses systems-based approaches to translational
medicine. This is made possible by the convergent acceleration of several disciplines …

Executable cancer models: successes and challenges

MA Clarke, J Fisher - Nature Reviews Cancer, 2020 - nature.com
Making decisions on how best to treat cancer patients requires the integration of different
data sets, including genomic profiles, tumour histopathology, radiological images, proteomic …

Advances in precision medicine: tailoring individualized therapies

KB Matchett, N Lynam-Lennon, RW Watson… - 2017 - mdpi.com
The traditional bench-to-bedside pipeline involves using model systems and patient
samples to provide insights into pathways deregulated in cancer. This discovery reveals …

Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits

T Azevedo, GM Dimitri, P Lió… - NPJ systems biology and …, 2021 - nature.com
Here, we performed a comprehensive intra-tissue and inter-tissue multilayer network
analysis of the human transcriptome. We generated an atlas of communities in gene co …

Can systems biology advance clinical precision oncology?

A Rocca, BN Kholodenko - Cancers, 2021 - mdpi.com
Simple Summary Omics technologies and targeted drugs are revolutionizing the clinical
oncology landscape, portending the promise of precision oncology. However, our abilities to …

Models of models: a translational route for cancer treatment and drug development

LA Ogilvie, A Kovachev, C Wierling, BMH Lange… - Frontiers in …, 2017 - frontiersin.org
Every patient and every disease is different. Each patient therefore requires a personalized
treatment approach. For technical reasons, a personalized approach is feasible for treatment …

Systems biology for cancer

IG Khalil, C Hill - Current opinion in oncology, 2005 - journals.lww.com
An important challenge facing the field is how better to translate in vitro discoveries to the
clinic. Computational systems biology approaches that use omic data to predict biology …

Systems medicine: a real approach for future personalized oncology?

DH Roukos - Pharmacogenomics, 2010 - Taylor & Francis
Current and emerging biomedical science efforts are driven by determining how to improve
clinical outcomes for patients, but the roadmap to achieve this goal has been controversial …

Open source tools and standardized data in cancer systems biology

P Macklin, SH Friedman, MultiCellDS Project - bioRxiv, 2018 - biorxiv.org
To reach the full potential of multicellular systems biology, mathematical and computational
modelers must pool their efforts to share and curate biophysical measurements, create and …