Putative inhibitors of SARS-CoV-2 main protease from a library of marine natural products: a virtual screening and molecular modeling study

D Gentile, V Patamia, A Scala, MT Sciortino, A Piperno… - Marine drugs, 2020 - mdpi.com
virtual screening against the SARS-CoV-2 M pro binding site using the library of Marine Natural
Products … structure employed as input, the virtual screening on the 164,952 conformers of …

An open-source drug discovery platform enables ultra-large virtual screens

C Gorgulla, A Boeszoermenyi, ZF Wang, PD Fischer… - Nature, 2020 - nature.com
… of compounds evaluated in a virtual screen by orders of … all of the tasks in the virtual screening
process. Such a platform … performance of VFVS, we screened a virtual library of 1.3 billion …

Structure-based virtual screening: from classical to artificial intelligence

EHB Maia, LC Assis, TA De Oliveira… - Frontiers in …, 2020 - frontiersin.org
… unexplored topic in the virtual screening process. Section Virtual Databases will list the main
virtual databases used in this task. Section Virtual screening algorithms presents the main …

Structure based pharmacophore modeling, virtual screening, molecular docking and ADMET approaches for identification of natural anti-cancer agents targeting XIAP …

FADM Opo, MM Rahman, F Ahammad, I Ahmed… - Scientific reports, 2021 - nature.com
natural compound database library. To create the database for pharmacophore based virtual
screening… ZINC natural products and ZINC natural derivatives” consist millions of Drug-like, …

Review on natural products databases: where to find data in 2020

M Sorokina, C Steinbeck - Journal of cheminformatics, 2020 - Springer
… For example, the prior virtual screening of known NPs can prevent loss of time with extracting
and … The pan-African natural products library (p-ANAPL) also needs to be cited here, as it …

COCONUT online: collection of open natural products database

M Sorokina, P Merseburger, K Rajan, MA Yirik… - Journal of …, 2021 - Springer
screening and other in silico applications. In this manuscript we present the online version of
the COlleCtion of Open Natural prodUcTs (… The CDK [13] library is used to process chemical …

Virtual screening and repurposing of FDA approved drugs against COVID-19 main protease

M Kandeel, M Al-Nazawi - Life sciences, 2020 - Elsevier
… In this study, the first virtual screening study against the first known COVID-19 was performed.
The obtained results will help in the repurposing of already approved drugs to combat the …

[HTML][HTML] Natural products in drug discovery: advances and opportunities

AG Atanasov, SB Zotchev, VM Dirsch… - Nature reviews Drug …, 2021 - nature.com
… a wider area of chemical space compared with typical synthetic small-molecule libraries 13 .
… NP screens typically involve a library of extracts from natural sources (Fig. 1), which may not …

Current trends in computer aided drug design and a highlight of drugs discovered via computational techniques: A review

VT Sabe, T Ntombela, LA Jhamba… - European Journal of …, 2021 - Elsevier
… the terms, virtual screening; software methods; computational … was on the databases
screened, virtual screening and/or … A myriad of virtual compound libraries and databases can be …

Computational approaches streamlining drug discovery

AV Sadybekov, V Katritch - Nature, 2023 - nature.com
virtual screening is ongoing. To speed up virtual screening of ultra-large chemical libraries,
… a sparse library subset are used to train ML models, which are then used to filter the whole …