… HOCOMOCO v12, which was rebuilt from scratch utilizing in vivo and in vitro high-throughput
data on TF binding … curation, we assembled an updated catalog of binding motifs for 949 …

… PB) was extracted from the Hocomoco database v12 [37]. … DNA binding motifs across
species [36], the proposed human ZNF407 DNA binding motif was searched for within our murine …

… Mouse models were used to demonstrate low off-target activity of prime editing when … -specific
TF binding with allele variants in different types of cells, is based on the HOCOMOCO and …

… two main goals: to serve as a go-between for most common 11 biological motif programs
and Bioconductor packages used by the research community, and to 12 provide a robust set of …

… from a recent study for mouse and human as examples (54). … in the foreground set is not due
to binding of specific TFs, but … the most reliable and popular, the HOCOMOCO (10), CisBP (…

… , such as JASPAR (22) and HOCOMOCO (23), which collected vast amounts 121 of …
Hocomoco in 2024: A rebuild of the curated collection of binding 467 models for human and mouse …

… For each specific cell line, we curated relevant knockout experiments from the KnockTF2 …
promoters of target genes with TF binding sites (TFBS) from HOCOMOCO ( 23 ) and CIS-BP …

… HOCOMOCO in 2024: a rebuild of the curated collection of binding models for human
and mouse transcription factors… Nucleic Acids Research 2024; 52: D154–D163. …

… using the HOCOMOCO collection of 401 TF-binding motifs (64) … We curated four scATAC-seq
datasets to understand the cell … (We discarded the 1381 mouse-only VISTA regions in our …

… human embryos at the late blastocyst stage to identify potential transcription factor (TF)
binding … We next manually curated a list of gene sets representing the most relevant pathways …