… least two ENCODE cell lines at the transcriptional start site at 57 of these … paired-end
sequencing data and at least one matching input control. These criteria yielded 96 total sequencing …

… the genome landscapes of … strategy such that both polyA+ and polyA−transcripts are
included. The library construction and the Illumina sequencing using a paired-end 150 bp strategy …

… Amplicon pools were subject to Illumina NovaSeq 6000 (150 PE) sequencing, and on
average 20 M paired-end reads were obtained from each replicate of a sample, with high …

… aimed to reconstruct transcripts from paired-end short reads. … is the inaccurate annotation
of transcript start sites (TSS) and … sequenced, with an average of 7 million aligned paired-end …

… -seq reveals a rich landscape of TSSs associated with Pol III transcripts that have not …
sequenced on Illumina MiSeq (75-bp paired-end sequencing). The corresponding sequencing …

… Immediately, gel beads are dissolved and cDNA is amplified via PCR followed by library
construction and sequencing. Libraries were paired-end sequenced on a HiSeq 4000. On …

… of gene expression (CAGE) sequencing, we show that … shaping the plant transcription initiation
landscape, we employ … reported by the paired end analysis of transcription start site (PEAT…

… in preventing cryptic transcription initiation in … sequencing were performed by the Integrated
Genomics Operation Core Facility at MSKCC on a HiSeq 2500 in a 50-bp/50-bp paired-end …

… of T7 promoter transcription start site) … paired-end sequenced on a NovaSeq 6000 SP v1.5
flow cell using a modified run setup (see Table S2) to capture all necessary index sequence …

… that sequencing runs are carried in a paired-end format, first, … to see ATAC-seq libraries
sequenced as 2×75mers or longer … profile curve around the transcription start sites of protein …