Fragment-pair based drug molecule solubility prediction through attention mechanism

J Liu, X Lei, C Ji, Y Pan - Frontiers in Pharmacology, 2023 - frontiersin.org
… Based on existing methods, we propose a model named MolSOL, which uses a fragment-based
attention model framework to study the solubility of drug molecules. Firstly, we …

Investigation of Different Fragmentation Methods for Drug Database Preparation

HHE Lim, Z Meng - IRC Conference on Science, Engineering and …, 2023 - Springer
Fragment based drug design is an important subfield in drug discovery and the effectiveness
of it relies on having a good fragment database with specific requirements. This can be …

Fragment dissolved molecular dynamics: a systematic and efficient method to locate binding sites

C Privat, JM Granadino-Roldán, J Bonet… - Physical Chemistry …, 2021 - pubs.rsc.org
… Diverse computational methods to support fragment-based drug discovery (FBDD) are
available in the literature. Despite their demonstrated efficacy in supporting FBDD campaigns, …

Fragment-based covalent ligand discovery

W Lu, M Kostic, T Zhang, J Che, MP Patricelli… - RSC chemical …, 2021 - pubs.rsc.org
Fragment-based drug discovery, which has traditionally been used in a target-… fragment-based
ligand discovery, which integrates the benefits of covalent targeting and fragment-based

Fragment merging using a graph database samples different catalogue space than similarity search

S Wills, R Sanchez-Garcia, T Dudgeon… - Journal of Chemical …, 2023 - ACS Publications
Fragment-based drug discovery (FBDD) involves the screening of low-molecular-weight
compounds (typically ∼200 Da) against a target of interest, which can subsequently be …

Enhancing fragment-based protein structure prediction by customising fragment cardinality according to local secondary structure

J Abbass, JC Nebel - BMC bioinformatics, 2020 - Springer
… enhance their fragment-based PSP approaches … fragment-based PSP approaches, resampling
techniques and a description of the Rosetta tool, we propose to improve fragment-based

[PDF][PDF] Fragment-based modelling of protein-RNA complexes for protein design

A Kravchenko - 2023 - theses.hal.science
… With my colleague Hrishikesh Dhondge (ESR3), we have developed an anchor-driven
fragment-based docking pipeline for RRM-ssRNA docking, as an updated version of an already …

A general QSPR protocol for the prediction of atomic/inter-atomic properties: a fragment based graph convolutional neural network (F-GCN)

P Gao, J Zhang, H Qiu, S Zhao - Physical Chemistry Chemical Physics, 2021 - pubs.rsc.org
… In this study, we tried to propose a novel GCN architecture, a fragment based graph neural
network (F-GCN), which can make accurate predictions of atomic/inter-atomic properties with …

Towards Interactive Image Inpainting via Robust Sketch Refinement

C Liu, S Xu, J Peng, K Zhang… - IEEE Transactions on …, 2024 - ieeexplore.ieee.org
… -term correlation, where studies for pluralistic image completion [31], [32], bridging the
interactions of different image regions [33], and large hole image inpainting [34] are promoted and …

Method of fragment based tracking of displacement of a large areal object in images

VV Lopatina - Journal of Physics: Conference Series, 2021 - iopscience.iop.org
… necessitates fragment based tracking of the displacement of a large areal object in images.
… The paper proposes a method of fragment based tracking of the displacement of a large …