Robust fragment-based method of calculating hydrogen atom transfer activation barrier in complex molecules

Y Liu, FC Pickard, GW Sluggett… - Physical Chemistry …, 2024 - pubs.rsc.org
… We further propose a robust and economical fragment-based method to obtain overall
activation barriers, by combining the covalent activation barrier calculated for a small molecular …

Development of a web-based laboratory class to reduce the challenges in teaching fragment-based drug design

XX Shi, JY Li, Q Chen, XL Zhu, GF Hao… - Journal of Chemical …, 2020 - ACS Publications
Fragment-based drug design (FBDD) is a promising methodology to find quality drug leads.
It is … provides the basis for the fragment-based design of novel strobilurin fungicide leads. …

SHAPE-enabled fragment-based ligand discovery for RNA

MJ Zeller, O Favorov, K Li… - Proceedings of the …, 2022 - National Acad Sciences
… Here, we devise a technology that leverages fragment-based screening and SHAPE-MaP
RNA structure probing to discover small-molecule fragments that bind an RNA structure of …

FB-REDA: fragment-based decomposition analysis of the reorganization energy for organic semiconductors

KH Lin, C Corminboeuf - Physical Chemistry Chemical Physics, 2020 - pubs.rsc.org
… We present a fragment-based decomposition analysis tool (FB-REDA) for the
reorganisation energy (λ). This tool delivers insights on how to rationally design low-λ organic …

Coumarins as factor XIIa inhibitors: Potency and selectivity improvements using a fragment-based strategy

C Davoine, A Traina, J Evrard, S Lanners… - European Journal of …, 2023 - Elsevier
… In this work, we used fragment-based drug discovery approach to improve our coumarin
series. First, we screened about 200 fragments for the S1 pocket. The S1 pocket of trypsin-like …

[引用][C] Developing a workflow management system for fragment-based virtual screening

SA Bray - 2023 - Dissertation, Universität Freiburg …

Development of selective class I protein arginine methyltransferase inhibitors through fragment-based drug design approach

D Bhattacharya, ASM Li, B Paul, UG Dastidar… - European Journal of …, 2023 - Elsevier
… Herein, we report the successful application of a fragment-based approach toward the
discovery of selective Class I PRMT inhibitors. Structure-based ligand optimization was performed …

[PDF][PDF] Fragment-based determination of a proteinase K structure from MicroED data using

… substrate scope of our study precludes conclusions on the general application of
fragment-based phasing to MicroED data, our results demonstrate that fragment-based phasing is …

Design, synthesis and biological evaluation of novel indazole-based derivatives as potent HDAC inhibitors via fragment-based virtual screening

J Liu, J Zhou, F He, L Gao, Y Wen, L Gao… - European Journal of …, 2020 - Elsevier
Fragment-based drug design has become an important and … Fragment screening is very
important for fragment-based drug … Another challenge of fragment-based drug design was that …

Deepzzle: Solving visual jigsaw puzzles with deep learning and shortest path optimization

MM Paumard, D Picard, H Tabia - IEEE Transactions on Image …, 2020 - ieeexplore.ieee.org
We tackle the image reassembly problem with wide space between the fragments, in such a
way that the patterns and colors continuity is mostly unusable. The spacing emulates the …