[HTML][HTML] Correlation AnalyzeR: functional predictions from gene co-expression correlations

HE Miller, AJR Bishop - BMC bioinformatics, 2021 - Springer
predicting gene function, as genesco-expression analysis remains a prominent tool
for exploratory systemic evaluation, largely because it is capable of considering gene co-expression

[HTML][HTML] Consensus gene co-expression network analysis identifies novel genes associated with severity of fibrotic lung disease

S Ghandikota, M Sharma, HH Ediga… - International Journal of …, 2022 - mdpi.com
gene lists. Recent attempts have been made to analyze gene co-expression networks to
detect key genes, … These modules are often strongly enriched for distinct functional categories, …

[HTML][HTML] Weighted gene co-expression network analysis identifies specific modules and hub genes related to coronary artery disease

PF Zheng, LZ Chen, YZ Guan, P Liu - Scientific Reports, 2021 - nature.com
disease were identified using weighted gene co-expression network analysis (WGCNA). …
intelligence medicine to assistant disease risk prediction and disease diagnosis based on small …

[HTML][HTML] Gene co-expression in the interactome: moving from correlation toward causation via an integrated approach to disease module discovery

P Paci, G Fiscon, F Conte, RS Wang, L Farina… - NPJ systems biology …, 2021 - nature.com
… of co-expression network analysis with the human interactome network to predict novel
putative disease genes and … , we exploited the SWIM software, a program for gene co-expression

[HTML][HTML] Identifying biomarkers to predict the progression and prognosis of breast cancer by weighted gene co-expression network analysis

G Shi, Z Shen, Y Liu, W Yin - Frontiers in Genetics, 2020 - frontiersin.org
… may be functionally related. Weighted gene co-expression network analysis (WGCNA) is an
open source tool to perform co-expression analysis based on the theory. WGCNA integrates …

[HTML][HTML] Colorectal cancer prediction based on weighted gene co-expression network analysis and variational auto-encoder

D Ai, Y Wang, X Li, H Pan - Biomolecules, 2020 - mdpi.com
… matrix of the gene co-expression, adjacency function, and the … and more biologically
significant co-expression modules [40]. A … or disease can be extracted from these co-expression

[HTML][HTML] Coupling of co-expression network analysis and machine learning validation unearthed potential key genes involved in rheumatoid arthritis

J Xiao, R Wang, X Cai, Z Ye - Frontiers in Genetics, 2021 - frontiersin.org
… , the effectiveness of prediction might reflect the … gene co-expression network analysis (WGCNA)
in conjunction with differentially expressed gene (DEG) analysis to select the key genes

[HTML][HTML] Co-expression based cancer staging and application

X Yu, S Cao, Y Zhou, Z Yu, Y Xu - Scientific reports, 2020 - nature.com
… cancer-stage prediction. Our own analyses have discovered that co-expression patterns are
… published studies that predict cancer stages using co-expression patterns of cancer tissues. …

Transcriptome-wide prediction of prostate cancer gene expression from histopathology images using co-expression-based convolutional neural networks

P Weitz, Y Wang, K Kartasalo, L Egevad… - …, 2022 - academic.oup.com
… complexity of predicting expression levels of 15 … co-expression. Transcripts were assigned
to clusters only based on the development data in order to preserve independence of the test

[HTML][HTML] Leveraging gene co-expression patterns to infer trait-relevant tissues in genome-wide association studies

L Shang, JA Smith, X Zhou - PLoS genetics, 2020 - journals.plos.org
gene co-expression sub-networks have been shown to contain valuable information for
predicting gene-… Here, we aim to leverage tissue-specific gene co-expression networks to infer …