Advantages of CEMiTool for gene co-expression analysis of RNA-seq data

CW Cheng, DJ Beech, SB Wheatcroft - Computers in biology and medicine, 2020 - Elsevier
… However, gene co-expression analysis is complex and may … how genes are interacting
with one another and to predictgenes [[5], [6], [7], [8], [9]], and functional classification of …

A Gleason score-related outcome model for human prostate cancer: a comprehensive study based on weighted gene co-expression network analysis

Y Wang, Z Yang - Cancer cell international, 2020 - Springer
… We aim to establishing an effective and reliable model to predict the outcome … gene co-expression
network analysis (WGCNA) is an R package for weighted correlation network analysis

Four novel prognostic genes related to prostate cancer identified using co-expression structure network analysis

T Feng, D Wei, Q Li, X Yang, Y Han, Y Luo… - … in Genetics, 2021 - frontiersin.org
… ) that could truly predict the progression and prognosis … gene co-expression modules that
are correlated with the progression of PCa. After a range of rigorous screening, 41 hub genes (…

Construction of gene-classifier and co-expression network analysis of genes in association with major depressive disorder

D Guo, S Zhang, Z Tang, H Wang - Psychiatry Research, 2020 - Elsevier
… of major depressive disorder (MDD) is still … analyze its molecular mechanisms and develop
a gene classifier to improve diagnostic accuracy. We extracted differentially expressed genes

GWENA: gene co-expression networks analysis and extended modules characterization in a single Bioconductor package

GG Lemoine, MP Scott-Boyer, B Ambroise, O Périn… - BMC …, 2021 - Springer
… that integrates gene co-expression network construction … analysis of gene co-expression
networks. Thanks to biological and topological information as well as differential co-expression, …

[HTML][HTML] Weighted gene coexpression network analysis to identify key modules and hub genes associated with atrial fibrillation

W Li, L Wang, Y Wu, Z Yuan… - … Journal of Molecular …, 2020 - spandidos-publications.com
… In the present study, weighted gene coexpression network analysis (WGCNA) was … and
the Wnt pathway (43,44), and these interactions were also predicted by GO enrichment of the …

… of key genes involved in the recurrence of glioblastoma multiforme using weighted gene co-expression network analysis and differential expression analysis

P Ren, JY Wang, L Li, XW Lin, GH Wu, JY Chen… - …, 2021 - Taylor & Francis
… To verify the value of predicting the prognosis of hub genes, Kaplan–Meier survival …
technology, we identified three gene co-expression modules associated with the recurrence state …

Comprehensive analysis of diabetic nephropathy expression profile based on weighted gene co-expression network analysis algorithm

A Gholaminejad, M Fathalipour, A Roointan - BMC nephrology, 2021 - Springer
… In systems biology studies, weighted gene co-expression network analysis (WGCNA)
has been … of a network comprising of hub genes, the predicted TFs, and miRNA molecules. …

Gene biomarker discovery at different stages of Alzheimer using gene co-expression network approach

NS Soleimani Zakeri, S Pashazadeh, H MotieGhader - Scientific reports, 2020 - nature.com
… used gene expression data to predict … In summary, our proposed method aimed to conduct
a prognostic study of Alzheimer’s disease and used the Gene co-expression Network analysis

[HTML][HTML] Gene expression data analysis using Hellinger correlation in weighted gene co-expression networks (WGCNA)

T Zhang, G Wong - Computational and structural biotechnology journal, 2022 - Elsevier
… Therefore, we took the absolute value of linear coefficients during gene co-expression … and
other linear coefficients to predict pairwise biological dependence between genes based on …