Comparative analyses of gene co-expression networks: Implementations and applications in the study of evolution

K Ovens, BF Eames, I McQuillan - Frontiers in Genetics, 2021 - frontiersin.org
… method to functional relationships that are predicted on the basis of computational analysis
of … detection in GCNs is weighted gene co-expression network analysis (WGCNA). Although …

Identification of four potential biomarkers associated with coronary artery disease in non-diabetic patients by gene co-expression network analysis

M Jiao, J Li, Q Zhang, X Xu, R Li, P Dong… - … in Genetics, 2020 - frontiersin.org
… Before constructing the weighted gene co-expression modules, we selected an appropriate
power value for relative, which mainly balanced the scale independence and means …

Prognostic Significance and Gene Co-Expression Network of PLAU and PLAUR in Gliomas

J Li, H Fan, X Zhou, Y Xiang, Y Liu - Frontiers in Oncology, 2022 - frontiersin.org
… In gene co-expression network analysis PLAU and PLAUR … , potential gene functions and
pathways were predicted … , network modules, among other functional categories. In the current …

… genes and construction of a transcriptional regulatory network associated with tumor recurrence in colorectal cancer by weighted gene co-expression network analysis

S Liu, F Zeng, G Fan, Q Dong - Frontiers in genetics, 2021 - frontiersin.org
… a gene co-expression network to predict the hub genes … the regulatory network of hub genes
and transcription factors (… were analyzed via weighted gene co-expression network analysis

The landscape of gene co-expression modules correlating with prognostic genetic abnormalities in AML

C Guo, Y Gao, Q Ju, C Zhang, M Gong, Z Li - Journal of Translational …, 2021 - Springer
… ORA detected the enriched pathways for the key co-expression … regression analysis
was employed to build the prediction … We identified the significantly correlated gene co-expression

Weighted gene co-expression network analysis combined with machine learning validation to identify key modules and hub genes associated with SARS-CoV-2 …

H Karami, A Derakhshani, M Ghasemigol… - Journal of clinical …, 2021 - mdpi.com
… The identification of key genes and pathways in this disease … applied weighted gene co-expression
network analysis and … the importance of genes in the model predictions. We applied …

Identification of genetic variants that impact gene co-expression relationships using large-scale single-cell data

S Li, KT Schmid, DH de Vries, M Korshevniuk, C Losert… - Genome Biology, 2023 - Springer
genetic regulation of gene co-expression by conducting the largest-to-date co-eQTL meta-analysis
in … medicine through better genetic risk prediction for diseases and personalized drug …

Discovery of gene module acting on ubiquitin-mediated proteolysis pathway by co-expression network analysis for endometriosis

B Li, S Wang, H Duan, Y Wang, Z Guo - Reproductive BioMedicine Online, 2021 - Elsevier
… to predict gene function (Lan et al., 2006). In the present study, weighted gene co-expression
network analysis (WGCNA) was used to build … Enrichment analysis of functional categories

… validation of novel 8-gene prognostic signature associated with the proportion of regulatory T cells by weighted gene co-expression network analysis in uterine corpus …

J Liu, R Geng, S Yang, F Shao, Z Zhong… - Frontiers in …, 2021 - frontiersin.org
… Afterward, we analyzed the expression difference of TRRS and verified its ability to predict
… A total of 4,703 genes were applied to set up a weighted co-expression network based on …

DeepIDA: Predicting isoform-disease associations by data fusion and deep neural networks

G Yu, Y Yang, Y Yan, M Guo, X Zhang… - … /ACM Transactions on …, 2021 - ieeexplore.ieee.org
… network to predict the functions of isoforms from their genomic sequences and then refines
the prediction using a conditional random field based on isoform coexpression relationship. …