[HTML][HTML] Single-cell co-expression analysis reveals that transcriptional modules are shared across cell types in the brain

BD Harris, M Crow, S Fischer, J Gillis - Cell systems, 2021 - cell.com
co-expression. Because shared expression patterns are thought to reflect shared function,
co-expression networks describe functional relationships between genes, including co-…

Key genes and co-expression modules involved in asthma pathogenesis

Y Huang, H Liu, L Zuo, A Tao - PeerJ, 2020 - peerj.com
genes in the asthma development, while the role of WGCNA is to set up gene co-expression
error rate between the CV predictions and the observed values, were used to evaluate the …

Classification of cancer types using graph convolutional neural networks

R Ramirez, YC Chiu, A Hererra, M Mostavi… - Frontiers in …, 2020 - frontiersin.org
… Also, we examined the co-expression graph model and effects of each gene on the
accuracy of cancer type prediction using in silico gene perturbation, where we set one …

Identification of the association between HMMR expression and progression of hepatocellular carcinoma via construction of a coexpression network

D Lu, X Bai, Q Zou, Z Gan, Y Lv - Oncology Letters, 2020 - spandidos-publications.com
… of hepatocarcinogenesis and weighted gene coexpression network analysis, hub genes
associated with the progression of HCC were identified using the gene expression profiles of …

Weighted gene co-expression network analysis identifies CALD1 as a biomarker related to M2 macrophages infiltration in stage III and IV mismatch repair-proficient …

H Zheng, Y Bai, J Wang, S Chen, J Zhang… - Frontiers in Molecular …, 2021 - frontiersin.org
… (D) Dendrogram of genes clustered with dissimilarity based on topological overlap; each …
of genes in the constructed gene co-expression network. Gray indicated that genes were not …

An integrated analysis of mRNAs, lncRNAs, and miRNAs based on weighted gene co-expression network analysis involved in bovine endometritis

N Sheybani, MR Bakhtiarizadeh, A Salehi - Scientific reports, 2021 - nature.com
… inflammatory diseases or immune responses 22,34 . Therefore, gene co-expression network
… by PPI data, functional enrichment analysis and target prediction analysis. Moreover, only …

Integrative transcriptomic and gene co-expression network analysis of host responses upon Verticillium dahliae infection in Gossypium hirsutum

G Zhang, Z Zhao, P Ma, Y Qu, G Sun, Q Chen - Scientific Reports, 2021 - nature.com
genes were randomly selected for qPCR validation of the RNA-Seq data. Numerous genes
encompassed in disease … the weighted gene co-expression network and 11 hub genes were …

Weighted miRNA co-expression networks analysis identifies circulating miRNA predicting overall survival in hepatocellular carcinoma patients

D Pascut, MY Pratama, F Gilardi, M Giuffrè, LS Crocè… - Scientific reports, 2020 - nature.com
… For network construction, the absolute value of the correlation of paired miRNAs was used
to define the gene co-expression network. Subsequently, the gene expression similarity …

Identification of castration‐resistant prostate cancer‐related hub genes using weighted gene coexpression network analysis

Y Cheng, L Li, Z Qin, X Li, F Qi - Journal of Cellular and …, 2020 - Wiley Online Library
… We downloaded gene expression profile of mRNA and related clinical data of … gene co-expression
network analysis (WGCNA) was used to identify the relationships between gene

Decreased PTGDS expression predicting poor survival of endometrial cancer by integrating weighted gene co-expression network analysis and immunohistochemical …

R Zou, M Zheng, M Tan, H Xu, N Luan… - Cancer Management …, 2020 - Taylor & Francis
… bioinformatics analysis is lacking. Citation6 Weighted gene co-expression network analysis
(… targets by constructing a scale-free gene co-expression network. The tool has been widely …