Comprehensive analysis of biomarkers for prostate cancer based on weighted gene co-expression network analysis

X Chen, J Wang, X Peng, K Liu, C Zhang, X Zeng… - Medicine, 2020 - journals.lww.com
… cycle genes are proved as potential markers that could predict … between different gene
sets or between gene sets and … gene co-expression network of correlation patterns among …

Weighted gene coexpression network analysis reveals potential candidate genes affecting drip loss in pork

X Zhao, C Wang, Y Wang, L Zhou, H Hu, L Bai… - … Genetics, 2020 - Wiley Online Library
… Using 28 identical samples, in the present study, we performed weighted gene co-expression
network analysis with drip loss and drip loss-related traits, including water-holding capacity…

Identification of hub genes in papillary thyroid carcinoma: robust rank aggregation and weighted gene co-expression network analysis

Y Liu, TY Chen, ZY Yang, W Fang, Q Wu… - Journal of translational …, 2020 - Springer
gene co-expression network to identify the hub genes closely … function genes, gene set
enrichment analysis (GSEA) on hub … genes, we conducted GSEA, which is widely used to predict

Integration and gene co-expression network analysis of scRNA-seq transcriptomes reveal heterogeneity and key functional genes in human spermatogenesis

N Salehi, MH Karimi-Jafari, M Totonchi… - Scientific Reports, 2021 - nature.com
… The topological analysis of the weighted gene co-expressiongene co-expression network
indicates bridge genes … dendrogram of genes in the weighted gene co-expression network (…

NIDM: network impulsive dynamics on multiplex biological network for disease-gene prediction

J Xiang, J Zhang, R Zheng, X Li… - Briefings in …, 2021 - academic.oup.com
Gene co-expression network is of biological importance because the coordinated … of
network-based disease-gene-prediction algorithms, which are classified by their approaches to …

Brain gene co-expression networks link complement signaling with convergent synaptic pathology in schizophrenia

M Kim, JR Haney, P Zhang, LM Hernandez… - Nature …, 2021 - nature.com
gene co-expression networks to capture coherent biological processes that covary across
samples 22 and hence provide an unbiased functional … 53 functional categories capturing a …

[HTML][HTML] Identification of key modules and genes associated with breast cancer prognosis using WGCNA and ceRNA network analysis

X Yin, P Wang, T Yang, G Li, X Teng, W Huang… - Aging (albany …, 2021 - ncbi.nlm.nih.gov
… and predicting BRCA prognosis. BRCA is multifactorial disease most caused by genetic
We summarized the gene co-expression by eigengenes and calculated the correlation of …

Recent advances in network-based methods for disease gene prediction

SK Ata, M Wu, Y Fang, L Ou-Yang… - Briefings in …, 2021 - academic.oup.com
… In [31], the proposed approach Disjunctive Graph Integration (DiGI) merges gene co-expression
network, pathways, functional links, phenotype similarity database, cofunctional network …

Integrative analysis of histopathological images and genomic data in colon adenocarcinoma

H Li, L Chen, H Zeng, Q Liao, J Ji, X Ma - Frontiers in Oncology, 2021 - frontiersin.org
… weighted gene co-expression network analysis (WGCNA) to identify the co-expression gene
module … prediction model, which had a better prediction performance than other models. In …

The effect of tissue composition on gene co-expression

Y Zhang, J Cuerdo, MK Halushka… - Briefings in …, 2021 - academic.oup.com
analysis focused on co-expression among the 1414 genes with variance greater than one
in the mixed tumor samples. We identified a subset of these genes … , gene co-expression in …