[HTML][HTML] From GWAS to gene: transcriptome-wide association studies and other methods to functionally understand GWAS discoveries

B Li, MD Ritchie - Frontiers in Genetics, 2021 - frontiersin.org
… In this review, we focus on data integrative bioinformatics methods that combine GWAS
with … two types of data integrative methods. First, we describe fine-mapping methods. Fine-…

Transcriptome-wide association studies: recent advances in methods, applications and available databases

J Mai, M Lu, Q Gao, J Zeng, J Xiao - Communications Biology, 2023 - nature.com
Transcriptome-wide association study (TWAS) is an instrumental post-analysis to detect
significant gene-trait associations focusing on modeling transcription-level regulations, which …

Integrative Post-Genome-Wide Association Study Analyses Relevant to Psychiatric Disorders: Imputing Transcriptome and Proteome Signals

H Gedik, RE Peterson, BP Riley, VI Vladimirov… - Complex …, 2023 - karger.com
… based association scan between trait and predicted transcript level. Such an approach is
known as a transcriptome-wide association … datasets are large-scale proteome studies applying …

Aggregating multiple expression prediction models improves the power of transcriptome-wide association studies

P Zeng, J Dai, S Jin, X Zhou - Human Molecular Genetics, 2021 - academic.oup.com
… Many integrative genomics approaches have been recently … these integrative methods,
transcriptome-wide association study (TWAS) has become one of the most popular approaches (3…

MOSTWAS: multi-omic strategies for transcriptome-wide association studies

A Bhattacharya, Y Li, MI Love - PLoS Genetics, 2021 - journals.plos.org
… Using the final suite of 5,407 MOSTWAS models, we also conducted a transcriptome-wide
association study for risk of major depressive disorder (MDD) using summary statistics from …

[PDF][PDF] Analyzing and reconciling colocalization and transcriptome-wide association studies from the perspective of inferential reproducibility

A Hukku, MG Sampson, F Luca, R Pique-Regi… - The American Journal of …, 2022 - cell.com
… As a result of recent expansions in the large-scale joint genotyping and phenotyping of …
prevailing types of integrative genetic analyses: transcriptome-wide association studies (TWASs) …

A powerful fine-mapping method for transcriptome-wide association studies

C Wu, W Pan - Human genetics, 2020 - Springer
Transcriptome-wide association studies (TWAS) have been recently … approach yielded a
well-controlled Type I error rate while achieving higher power and AUC than competing methods

Transcriptomewide association studies: A view from Mendelian randomization

H Zhu, X Zhou - Quantitative Biology, 2021 - Wiley Online Library
… Because of consent and privacy concerns, as well as logistic limitations ( eg., large-scale
from large-scale association studies. Indeed, using summary statistics across multiple studies

On the interpretation of transcriptome-wide association studies

C de Leeuw, J Werme, JE Savage, WJ Peyrot… - PLoS …, 2023 - journals.plos.org
… The aim of transcriptome-wide association studies (TWAS) is … large-scale genetic association
results from existing studiesmethods traditionally used to perform these TWAS studies do …

[PDF][PDF] Probabilistic integration of transcriptome-wide association studies and colocalization analysis identifies key molecular pathways of complex traits

J Okamoto, L Wang, X Yin, F Luca, R Pique-Regi… - The American Journal of …, 2023 - cell.com
… Analyzing complex-trait GWAS data We apply INTACT to the large-scale GWAS data of
four complex traits: high-density lipoprotein (HDL) from the GLGC consortium, low-density …