Biomedical discovery through the integrative biomedical knowledge hub (iBKH)

C Su, Y Hou, M Zhou, S Rajendran, JRMA Maasch… - Iscience, 2023 - cell.com
… integrative Biomedical Knowledge Hub (iBKH) by harmonizing and integrating information
from diverse biomedical resources. To make iBKH easily accessible for biomedical research, …

Utilizing BERT for biomedical and clinical text mining

R Zhu, X Tu, JX Huang - Data analytics in biomedical engineering and …, 2021 - Elsevier
… a lot of natural language processing (NLP) … library of SentencePiece. Specifically the
scientific corpuses use a randomly picked domain-specific dataset of 1.14 M papers from Semantic

Thesaurus-based word embeddings for automated biomedical literature classification

DA Koutsomitropoulos, AD Andriopoulos - Neural Computing and …, 2022 - Springer
… thematically annotating biomedical resources [28]. At the same time, natural language processing
(… and secondly the semantics of the citations with a classification framework. Candidate …

Expediting knowledge acquisition by a web framework for Knowledge Graph Exploration and Visualization (KGEV): case studies on COVID-19 and Human Phenotype …

J Peng, D Xu, R Lee, S Xu, Y Zhou, K Wang - BMC Medical Informatics and …, 2022 - Springer
… All SemRep semantic types were used and they were mapped to their respective … SemRep
[29], a natural language processing tool used to mine triples, to process the CORD-19 data …

Information extraction from FDA drug Labeling to enhance product-specific guidance assessment using natural language processing

Y Shi, P Ren, YI Zhang, X Gong, M Hu… - Frontiers in research …, 2021 - frontiersin.org
… textual documents from different data resources to support an effective … a Natural Language
Processing (NLP) pipeline by integrating multiple disparate publicly available data resources

Clinical natural language processing for radiation oncology: a review and practical primer

DS Bitterman, TA Miller, RH Mak, GK Savova - International Journal of …, 2021 - Elsevier
… including linguistic features, semantic features, and features developed based on biomedical
… , and we refer readers to this framework when assessing the value of NLP technologies …

A survey on clinical natural language processing in the United Kingdom from 2007 to 2022

H Wu, M Wang, J Wu, F Francis, YH Chang… - NPJ digital …, 2022 - nature.com
… , biomedical ontologies provide a formal semantics for a wide range of biomedical concepts
… how the anonymization fits within a framework that would ensure confidentiality according to …

The treasury chest of text mining: piling available resources for powerful biomedical text mining

NÍ Rosário-Ferreira, C Marques-Pereira, M Pires… - BioChem, 2021 - mdpi.com
… In this scope, the focus will be mainly on natural language processing (NLP) methods, a …
structural frameworks and can have errors like improper grammar, spelling errors or semantic

Review of natural language processing in pharmacology

D Trajanov, V Trajkovski, M Dimitrieva, J Dobreva… - Pharmacological …, 2023 - ASPET
… terms are enhanced by their semantic types (UMLS contains 44 unique semantic types). For
language model on the UMLS biomedical KG. They propose a metric learning framework

Bio-SODA: enabling natural language question answering over knowledge graphs without training data

AC Sima, T Mendes de Farias, M Anisimova… - Proceedings of the 33rd …, 2021 - dl.acm.org
… and the Semantic Web community, with … natural language processing over knowledge
graphs of scientific datasets. In particular, we introduce Bio-SODA, a natural language processing