Fast penalized regression and cross validation for tall data with the oem package

JD Huling, P Chien - Journal of Statistical Software, 2022 - jstatsoft.org
… We now make predictions using the best tuning parameter according to the cross validation
… In particular, we focus on the comparison with glmnet, as it has been carefully developed …

A two‐stage prediction model for heterogeneous effects of treatments

K Chalkou, E Steyerberg, M Egger, A Manca… - Statistics in …, 2021 - Wiley Online Library
… We propose a two‐stage prediction model for heterogeneous treatment effects by … In the
first stage, a prognostic model to predict the baseline risk of the outcome. In the second stage, …

[HTML][HTML] The Prediction of Distribution of the Invasive Fallopia Taxa in Slovakia

P Gašparovičová, M Ševčík, S David - Plants, 2022 - mdpi.com
predictions of partial models (for every run and every replication) for each algorithm; (2) by
calculating the weighted mean based on the AUC statisticspredicted values and predictions

Large-scale benchmark study of survival prediction methods using multi-omics data

M Herrmann, P Probst, R Hornung… - Briefings in …, 2021 - academic.oup.com
… of multi-omics data for the prediction of disease outcomes such as … most appropriate to derive
such prediction models. We aim to … prediction methods from machine learning and statistics

[HTML][HTML] Individual dynamic prediction of clinical endpoint from large dimensional longitudinal biomarker history: a landmark approach

A Devaux, R Genuer, K Peres… - BMC Medical Research …, 2022 - Springer
… Yet, statistical developments for individual prediction of event have so far either focused on
… We used cv.glmnet() function (from the glmnet R package) with internal cross-validation to …

BeSS: an R package for best subset selection in linear, logistic and Cox proportional hazards models

C Wen, A Zhang, S Quan, X Wang - Journal of Statistical Software, 2020 - jstatsoft.org
… We also include predict methods for ‘bess’ and ‘bess.one’ to make prediction on the new …
We also include glmnet as an approximate subset selection method and use the default cross-…

Wheat yield prediction based on weather parameters using multiple linear, neural network and penalised regression models

KS Aravind, A Vashisth… - Journal of …, 2022 - journal.agrimetassociation.org
… To overcome the various challenges in crop yield prediction, in … weather indices wheat yield
prediction models was developed… “glmnet” package in R software was used to solve LASSO …

[HTML][HTML] Prediction of breast cancer histological outcome by radiomics and artificial intelligence analysis in contrast-enhanced mammography

A Petrillo, R Fusco, E Di Bernardo, T Petrosino… - Cancers, 2022 - mdpi.com
… The aim of this study was to evaluate the potentialities of statistical and artificial intelligence
… The LASSO was designed using the glmnet R function and the hyperparameter was tuned …

[HTML][HTML] Novel molecular subtyping scheme based on in silico analysis of cuproptosis regulator gene patterns optimizes survival prediction and treatment of …

H Jiang, H Chen, Y Wang, Y Qian - Journal of Clinical Medicine, 2023 - mdpi.com
… The ‘glmnet’ R package was used to perform the LASSO … model and a nomogram to predict
the prognosis of patients with … Statistical analyses were performed using R Studio software …

Augmenting Expert Knowledge-Based Toxicity Alerts by Statistically Mined Molecular Fragments

S Chakravarti - Chemical Research in Toxicology, 2023 - ACS Publications
… However, it is important to note that the cv.glmnet algorithm operates in a purely statistical
… to improve prediction accuracy. Therefore, after obtaining the output from cv.glmnet, we …