The language of chromatin modification in human cancers

S Zhao, CD Allis, GG Wang - Nature Reviews Cancer, 2021 - nature.com
… Mutations within chromatin remodelling complexes represent another class of cancer-related
lesions, which are estimated to affect about 10–20% of all cancers 24 . Similar to …

Reevaluating the roles of histone-modifying enzymes and their associated chromatin modifications in transcriptional regulation

MAJ Morgan, A Shilatifard - Nature genetics, 2020 - nature.com
transcriptional activation and is instead likely to have a more complex role in chromatin
regulation … the uncoupling of H3K4me3 from transcriptional regulation in MLL2-mutant ESCs (Fig. …

An emerging role of chromatin-interacting RNA-binding proteins in transcription regulation

X Du, R Xiao - Essays in Biochemistry, 2020 - portlandpress.com
… -transcriptional events place RNA processing factors in close contact with chromatin during
transcription … processing factors to conversely regulate transcription. Despite the observations …

Gene transcription and chromatin regulation in hypoxia

M Batie, S Rocha - Biochemical Society Transactions, 2020 - portlandpress.com
… This includes changes in histone and DNA modification and localised chromatin compaction.
Further elucidating the complex, co-ordinated mechanisms of chromatin regulation in low …

[HTML][HTML] Regulatory mechanisms governing chromatin organization and function

R Villaseñor, T Baubec - Current Opinion in Cell Biology, 2021 - Elsevier
… advances in uncovering the mechanisms that regulate chromatin modifications. Here, we …
in chromatin biology ranging from cooperativity and multivalent interactions to regulatory

Differences in transcription initiation directionality underlie distinctions between plants and animals in chromatin modification patterns at genes and cis-regulatory …

BD Silver, CG Willett, KA Maher… - G3: Genes, Genomes …, 2024 - academic.oup.com
… gene body, suggesting that transcription does not initiate widely … transcription-associated
histone modifications and nascent transcripts at both transcription start sites and cis-regulatory

Heterogeneous fluid-like movements of chromatin and their implications to transcription

SS Ashwin, K Maeshima, M Sasai - Biophysical Reviews, 2020 - Springer
While it was previously thought that the transcriptional activity is associated with more open
and dynamic chromatin … more nuanced role of transcription in chromatin dynamics: dynamic …

GTRD: an integrated view of transcription regulation

S Kolmykov, I Yevshin, M Kulyashov… - Nucleic acids …, 2021 - academic.oup.com
… Figure 4 illustrates our vision of gene transcription regulation data and its integrative
analysis and representation within the GTRD framework. We also plan to integrate data on …

Epigenetic regulation of human non-coding RNA gene transcription

M Morselli, G Dieci - Biochemical Society Transactions, 2022 - portlandpress.com
… an unexpected complexity in chromatin-dependent regulation of ncRNA gene transcription
by the … Emerging common features, like the heterogeneity of chromatin states within ncRNA …

The Yin and Yang of histone marks in transcription

PB Talbert, S Henikoff - Annual review of genomics and human …, 2021 - annualreviews.org
… In contrast to H3K36me3 found over gene bodies, H3K36me2 is abundant around TSSs
and in intergenic regions, with lower levels throughout transcribed regions. Both H3K36me2 …