Identification of microbiota biomarkers with orthologous gene annotation for type 2 diabetes

YH Zhang, W Guo, T Zeng, SQ Zhang, L Chen… - Frontiers in …, 2021 - frontiersin.org
… we first introduced eggNOG database and KEGG ORTHOLOGY (KO) database for orthologous
(… is typically a hypothetical protein, the organisms from which such protein is derived from …

Construction of a Full-Length Transcriptome of Western Honeybee Midgut Tissue and Improved Genome Annotation

H Zang, S Guo, S Dong, Y Song, K Li, X Fan, J Qiu… - Genes, 2024 - mdpi.com
… of animals, plants, and microorganisms such as … ) (Table 4 and Table S1, Figure 1B). In
addition, 41,771 full-length transcripts were annotated to 25 functional categories in the eggNOG

Trait biases in microbial reference genomes

S Albright, S Louca - Scientific Data, 2023 - nature.com
eggNOG MPRs were substantially smaller than KEGG MPRs in 3 out of 6 environments (human,
other animals … on the organism having or lacking a specific gene (KEGG ortholog). For …

Metagenomic analysis identifies sex-related Cecal microbial gene functions and bacterial taxa in the quail

JE Ma, XW Xiong, JG Xu, JS Gong, J Li, Q Xu… - Frontiers in Veterinary …, 2021 - frontiersin.org
… the male animals had high abundances of Bacteroides, whereas female animals were enriched
… separately via BLAST against the KEGG, EggNOG, CAZy, and CARD databases using …

Correlation between microbial characteristics and reproductive status of the yak uterus based on macrogenomic analysis

R Wang, M Wang, Q Zeng, L Wang, Q Zhang… - BMC Veterinary …, 2024 - Springer
4b). All these annotated eggNOG class can be found in S4. … In summary, the diversity
of microorganisms in yak uteri is associated with different reproductive states. Additionally, …

Draft genome assembly data of Anoxybacillus sp. strain MB8 isolated from Tattapani hot springs, India

PK Vishnu Prasoodanan, SS Menon, R Saxena… - bioRxiv, 2021 - biorxiv.org
across the globe has revealed micro-organisms … to 21 eggNOG categories with their relative
abundance after alignment of the genes with eggnog v4.1 database and assigning eggNOG

Metagenomic analysis reveals the microbiome and antibiotic resistance genes in indigenous Chinese yellow-feathered chickens

Y Xu, Y Huang, L Guo, S Zhang, R Wu, X Fang… - Frontiers in …, 2022 - frontiersin.org
… The frequent use of antibiotics in livestock animals and humans … eggNOG database is
regarded as a significant public resource for functional annotation and is based on orthologous

Seasonal Changes in the Structure and Function of Gut Microbiota in the Muskrat (Ondatra zibethicus)

F Song, Y Xu, P Peng, H Li, R Zheng, H Zhang, Y Han… - Metabolites, 2023 - mdpi.com
microorganisms present in the digestive system of animals, … microorganisms provide effective
energy for muskrats over … based on the KEGG and eggNOG databases. The results of the …

Informative regions in viral genomes

JL Moreno-Gallego, A Reyes - Viruses, 2021 - mdpi.com
… times more abundant than other types of microorganisms and, although their inclusion in
a … , eggNOG has been implemented in its latest version a database of orthologous groups …

Parallel reductive genome evolution in Desulfovibrio ectosymbionts independently acquired by Trichonympha protists in the termite gut

M Takeuchi, H Kuwahara, T Murakami… - The ISME …, 2020 - academic.oup.com
… Genes and pseudogenes were classified into non-supervised orthologous groups (NOGs)
using EggNOG 4.5.1 [52]. The absence of genes that are functionally important but missing in …