Abstract The Gene Transcription Regulation Database (GTRD; http://gtrd. biouml. org/)
contains uniformly annotated and processed NGS data related to gene transcription …

The current version of the Gene Transcription Regulation Database (GTRD; http://gtrd.
biouml. org) contains information about:(i) transcription factor binding sites (TFBSs) and …

Abstract GTRD—Gene Transcription Regulation Database (http://gtrd. biouml. org)—is a
database of transcription factor binding sites (TFBSs) identified by ChIP-seq experiments for …

The increasing volume of ChIP-chip and ChIP-seq data being generated creates a
challenge for standard, integrative and reproducible bioinformatics data analysis platforms …

Non-coding RNAs (ncRNAs) are emerging as key regulators of various biological
processes. Although thousands of ncRNAs have been discovered, the transcriptional …

Abstract The Functional Annotation of the Mammalian Genome project (FANTOM5) mapped
transcription start sites (TSSs) and measured their activities in a diverse range of biological …

The TRANSFAC® database on eukaryotic transcriptional regulation, comprising data on
transcription factors, their target genes and regulatory binding sites, has been extended and …

Cap-analysis gene expression (CAGE) Basic and Analysis Databases store an original
resource produced by CAGE, which measures expression levels of transcription starting …

Abstract The Encyclopedia of DNA Elements (ENCODE) consortium aims to identify all
functional elements in the human genome including transcripts, transcriptional regulatory …

Due on the widespread use of next-generation sequencing technologies and systematic
approaches of large research consortia, such as ENCODE, FANTOM5, and Roadmap …