Abundant and diverse RNA viruses in insects revealed by RNA-Seq analysis: ecological and evolutionary implications

H Wu, R Pang, T Cheng, L Xue, H Zeng, T Lei… - Msystems, 2020 - Am Soc Microbiol
… Novel viruses were found to cover major categories of RNA viruses, and many formed novel
RNA viruses in insects. These newly characterized RNA viruses exhibited high levels of …

[图书][B] Fields virology: Emerging viruses

PM Howley, DM Knipe - 2020 - books.google.com
… of all RNA viruses simply reflects extreme levels of sequence … sequences assigned to
different RNA virus families still share a … of positive selection for both RNA and DNA viruses, and …

The Baltimore classification of viruses 50 years later: how does it stand in the light of virus evolution?

EV Koonin, M Krupovic, VI Agol - Microbiology and Molecular …, 2021 - Am Soc Microbiol
… classification, the ambisense RNA viruses are associated with the (–)RNA viruses in terms
of … seem to be evolution’s workshop for exploring, refining, and selecting genome replication …

Mutation rates, mutation frequencies, and proofreading-repair activities in RNA virus genetics

E Domingo, C García-Crespo, R Lobo-Vega, C Perales - Viruses, 2021 - mdpi.com
… , and random drift, and which may act as a unit of selection), which is crucial for virus adaptation
… feature of RNA viruses, other RNA genetic elements, and many DNA viruses. They push …

Analysis of RNA sequences of 3636 SARS-CoV-2 collected from 55 countries reveals selective sweep of one virus type

NK Biswas, PP Majumder - Indian Journal of Medical Research, 2020 - journals.lww.com
… and State level information as available from the submitter, viral type … For many pathogens,
in particular RNA viruses, the timescale on … in its population size and positive selection 15 16 . …

Dissimilation of synonymous codon usage bias in virus–host coevolution due to translational selection

F Chen, P Wu, S Deng, H Zhang, Y Hou, Z Hu… - Nature ecology & …, 2020 - nature.com
RNA viruses of the genus Totivirus, LA and L-BC. LA is a cytoplasmically transmitted virus
… expression to avoid impediment of host translation, such as changes in mRNA levels due to …

[HTML][HTML] Expansion of the global RNA virome reveals diverse clades of bacteriophages

U Neri, YI Wolf, S Roux, AP Camargo, B Lee… - Cell, 2022 - cell.com
… Analysis of >330,000 RNA-dependent RNARNA virus diversity. Gene content analysis
revealed multiple protein domains previously not found in RNA viruses and implicated in virus-…

Computational inference of selection underlying the evolution of the novel coronavirus, severe acute respiratory syndrome coronavirus 2

R Cagliani, D Forni, M Clerici, M Sironi - Journal of virology, 2020 - Am Soc Microbiol
RNA genomes which are unusually long and complex compared to those of other RNA
viruses. … Very recent evidence indicated that, although the average level of genome similarity is …

Natural selection in the evolution of SARS-CoV-2 in bats created a generalist virus and highly capable human pathogen

OA MacLean, S Lytras, S Weaver, JB Singer… - PLoS …, 2021 - journals.plos.org
… that, unlike most other RNA viruses which acquire … -level synonymous rates. (B) The nCoV
clade for 9/20 nonrecombinant segments that exhibit any evidence of branch-level selection

All about the RNA: interferon-stimulated genes that interfere with viral RNA processes

E Yang, MMH Li - Frontiers in immunology, 2020 - frontiersin.org
RNA viruses are frequently targeted by ISGs through … Rather than provide a comprehensive,
surface-level view of … have driven selection against high CG content in RNA viral genomes, …