[HTML][HTML] Putative inhibitors of SARS-CoV-2 main protease from a library of marine natural products: a virtual screening and molecular modeling study

D Gentile, V Patamia, A Scala, MT Sciortino, A Piperno… - Marine drugs, 2020 - mdpi.com
virtual screening against the SARS-CoV-2 M pro binding site using the library of Marine Natural
Products … structure employed as input, the virtual screening on the 164,952 conformers of …

[HTML][HTML] Virtual screening of natural products against type II transmembrane serine protease (TMPRSS2), the priming agent of coronavirus 2 (SARS-CoV-2)

N Rahman, Z Basharat, M Yousuf, G Castaldo… - Molecules, 2020 - mdpi.com
… In the current study, we used computational biology to screen and dock a library of natural
compounds to inhibit human TMPRSS2, which facilitates the entry of SARS-CoV-19 onto host …

Identification of novel compounds against three targets of SARS CoV-2 coronavirus by combined virtual screening and supervised machine learning

O Kadioglu, M Saeed, HJ Greten, T Efferth - Computers in biology and …, 2021 - Elsevier
… , molecular docking and supervised machine learning techniques. For this purpose, we used
a library … as anti-SARS-CoV-2 drugs as well as two chemical libraries with natural products. …

An open-source drug discovery platform enables ultra-large virtual screens

C Gorgulla, A Boeszoermenyi, ZF Wang, PD Fischer… - Nature, 2020 - nature.com
… of compounds evaluated in a virtual screen by orders of … all of the tasks in the virtual screening
process. Such a platform … performance of VFVS, we screened a virtual library of 1.3 billion …

[HTML][HTML] Structure-based virtual screening: from classical to artificial intelligence

EHB Maia, LC Assis, TA De Oliveira… - Frontiers in …, 2020 - frontiersin.org
… unexplored topic in the virtual screening process. Section Virtual Databases will list the main
virtual databases used in this task. Section Virtual screening algorithms presents the main …

[HTML][HTML] Structure based pharmacophore modeling, virtual screening, molecular docking and ADMET approaches for identification of natural anti-cancer agents …

FADM Opo, MM Rahman, F Ahammad, I Ahmed… - Scientific reports, 2021 - nature.com
natural compound database library. To create the database for pharmacophore based virtual
screening… ZINC natural products and ZINC natural derivatives” consist millions of Drug-like, …

[HTML][HTML] Potential inhibitors for novel coronavirus protease identified by virtual screening of 606 million compounds

A Fischer, M Sellner, S Neranjan, M Smieško… - International journal of …, 2020 - mdpi.com
… In this study, we screened a large library of over 606 million compounds with the aim to
discover novel inhibitors for the SARS-CoV-2 main protease. We designed a protocol consisting …

[HTML][HTML] Review on natural products databases: where to find data in 2020

M Sorokina, C Steinbeck - Journal of cheminformatics, 2020 - Springer
… For example, the prior virtual screening of known NPs can prevent loss of time with extracting
and … The pan-African natural products library (p-ANAPL) also needs to be cited here, as it …

[HTML][HTML] Deep learning based drug screening for novel coronavirus 2019-nCov

H Zhang, KM Saravanan, Y Yang, MT Hossain… - Interdisciplinary …, 2020 - Springer
… Here we apply this model to perform large-scale virtual screening. Since the method is …
We have applied DFCNN model to perform virtual screening against these three libraries for …

[HTML][HTML] COCONUT online: collection of open natural products database

M Sorokina, P Merseburger, K Rajan, MA Yirik… - Journal of …, 2021 - Springer
screening and other in silico applications. In this manuscript we present the online version of
the COlleCtion of Open Natural prodUcTs (… The CDK [13] library is used to process chemical …